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Dakota
Version 6.21
Explore and Predict with Confidence
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Dakota
Version 6.21
Explore and Predict with Confidence
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Derived approximation class for VPS implementation. More...
Public Member Functions | |
| VPSApproximation () | |
| default constructor | |
| VPSApproximation (const ProblemDescDB &problem_db, const SharedApproxData &shared_data, const String &approx_label) | |
| standard constructor (to call VPS from an input deck) | |
| VPSApproximation (const SharedApproxData &shared_data) | |
| Alternate constructor (to call VPS from another method like POF-darts) | |
| ~VPSApproximation () | |
| destructor | |
| bool | VPS_execute () |
| void | VPS_create_containers () |
| void | VPS_retrieve_neighbors (size_t ipoint, bool update_point_neighbors) |
| void | VPS_adjust_extend_neighbors_of_all_points () |
| void | VPS_extend_neighbors (size_t ipoint) |
| void | VPS_build_local_surrogate (size_t cell_index) |
| double | VPS_evaluate_surrogate (double *x) |
| void | VPS_destroy_global_containers () |
| void | retrieve_permutations (size_t &m, size_t **&perm, size_t num_dim, size_t upper_bound, bool force_sum_constraint, size_t sum_constraint) |
| void | build_radial_basis_function (size_t icell) |
| void | VPS_LS_retrieve_weights (size_t cell_index) |
| double | evaluate_basis_function (double *x, size_t icell, size_t ibasis) |
| int | constrained_LeastSquare (size_t n, size_t m, double **H, double *w, double *f) |
| double | vec_dot_vec (size_t n, double *vec_a, double *vec_b) |
| double | vec_pow_vec (size_t num_dim, double *vec_a, size_t *vec_b) |
| bool | Cholesky (int n, double **A, double **LD) |
| void | Cholesky_solver (int n, double **LD, double *b, double *x) |
| void | GMRES (size_t n, double **A, double *b, double *x, double eps) |
| void | printMatrix (size_t m, size_t n, double **M) |
| void | initiate_random_number_generator (unsigned long x) |
| double | generate_a_random_number () |
| size_t | retrieve_closest_cell (double *x) |
| bool | trim_line_using_Hyperplane (size_t num_dim, double *st, double *end, double *qH, double *nH) |
| double | f_test (double *x) |
| double * | grad_f_test (double *x) |
| double ** | hessian_f_test (double *x) |
| void | generate_poisson_disk_sample (double r) |
| void | generate_MC_sample () |
| void | isocontouring (std::string file_name, bool plot_test_function, bool plot_surrogate, std::vector< double > contours) |
| void | isocontouring_solid (std::string file_name, bool plot_test_function, bool plot_surrogate, std::vector< double > contours) |
| void | plot_neighbors () |
 Public Member Functions inherited from Approximation | |
| Approximation () | |
| default constructor More... | |
| Approximation (ProblemDescDB &problem_db, const SharedApproxData &shared_data, const String &approx_label) | |
| standard constructor for envelope More... | |
| Approximation (const SharedApproxData &shared_data) | |
| alternate constructor More... | |
| Approximation (const Approximation &approx) | |
| copy constructor More... | |
| virtual | ~Approximation () |
| destructor | |
| Approximation | operator= (const Approximation &approx) |
| assignment operator | |
| virtual void | active_model_key (const Pecos::ActiveKey &sd_key) |
| activate an approximation state based on its multi-index key | |
| virtual void | clear_model_keys () |
| reset initial state by removing all model keys for an approximation | |
| virtual void | build (int num_resp) |
| overloaded build to support field-based approximations; builds from scratch More... | |
| virtual void | export_model (const StringArray &var_labels=StringArray(), const String &fn_label="", const String &export_prefix="", const unsigned short export_format=NO_MODEL_FORMAT) |
| exports the approximation; if export_format > NO_MODEL_FORMAT, uses all 3 parameters, otherwise extracts these from the Approximation's sharedDataRep to build a filename | |
| virtual void | export_model (const Variables &vars, const String &fn_label="", const String &export_prefix="", const unsigned short export_format=NO_MODEL_FORMAT) |
| approximation export that generates labels from the passed Variables, since only the derived classes know how the variables are ordered w.r.t. the surrogate build; if export_format > NO_MODEL_FORMAT, uses all 3 parameters, otherwise extracts these from the Approximation's sharedDataRep to build a filename | |
| virtual void | rebuild () |
| rebuilds the approximation incrementally | |
| virtual void | replace (const IntResponsePair &response_pr, size_t fn_index) |
| replace the response data | |
| virtual void | pop_coefficients (bool save_data) |
| removes entries from end of SurrogateData::{vars,resp}Data (last points appended, or as specified in args) | |
| virtual void | push_coefficients () |
| restores state prior to previous pop() | |
| virtual void | finalize_coefficients () |
| finalize approximation by applying all remaining trial sets | |
| virtual void | clear_current_active_data () |
| clear current build data in preparation for next build More... | |
| virtual void | combine_coefficients () |
| combine all level approximations into a single aggregate approximation | |
| virtual void | combined_to_active_coefficients (bool clear_combined=true) |
| promote combined approximation into active approximation | |
| virtual void | clear_inactive_coefficients () |
| prune inactive coefficients following combination and promotion to active | |
| virtual RealVector | values (const Variables &vars) |
| retrieve the approximate function values for a given parameter vector | |
| virtual const RealSymMatrix & | hessian (const Variables &vars) |
| retrieve the approximate function Hessian for a given parameter vector | |
| virtual Real | value (const RealVector &c_vars) |
| retrieve the approximate function value for a given parameter vector | |
| virtual RealVector | values (const RealVector &c_vars) |
| retrieve the approximate function value for a given parameter vector | |
| virtual const RealVector & | gradient (const RealVector &c_vars) |
| retrieve the approximate function gradient for a given parameter vector | |
| virtual const RealSymMatrix & | hessian (const RealVector &c_vars) |
| retrieve the approximate function Hessian for a given parameter vector | |
| virtual Real | prediction_variance (const RealVector &c_vars) |
| retrieve the variance of the predicted value for a given parameter vector | |
| virtual Real | mean () |
| return the mean of the expansion, where all active vars are random | |
| virtual Real | mean (const RealVector &x) |
| return the mean of the expansion for a given parameter vector, where a subset of the active variables are random | |
| virtual Real | combined_mean () |
| return the mean of the combined expansion, where all active vars are random | |
| virtual Real | combined_mean (const RealVector &x) |
| return the mean of the combined expansion for a given parameter vector, where a subset of the active variables are random | |
| virtual const RealVector & | mean_gradient () |
| return the gradient of the expansion mean | |
| virtual const RealVector & | mean_gradient (const RealVector &x, const SizetArray &dvv) |
| return the gradient of the expansion mean | |
| virtual Real | variance () |
| return the variance of the expansion, where all active vars are random | |
| virtual Real | variance (const RealVector &x) |
| return the variance of the expansion for a given parameter vector, where a subset of the active variables are random | |
| virtual const RealVector & | variance_gradient () |
| virtual const RealVector & | variance_gradient (const RealVector &x, const SizetArray &dvv) |
| virtual Real | covariance (Approximation &approx_2) |
| return the covariance between two response expansions, treating all variables as random | |
| virtual Real | covariance (const RealVector &x, Approximation &approx_2) |
| return the covariance between two response expansions, treating a subset of the variables as random | |
| virtual Real | combined_covariance (Approximation &approx_2) |
| return the covariance between two combined response expansions, where all active variables are random | |
| virtual Real | combined_covariance (const RealVector &x, Approximation &approx_2) |
| return the covariance between two combined response expansions, where a subset of the active variables are random | |
| virtual void | compute_moments (bool full_stats=true, bool combined_stats=false) |
| virtual void | compute_moments (const RealVector &x, bool full_stats=true, bool combined_stats=false) |
| virtual const RealVector & | moments () const |
| virtual const RealVector & | expansion_moments () const |
| virtual const RealVector & | numerical_integration_moments () const |
| virtual const RealVector & | combined_moments () const |
| virtual Real | moment (size_t i) const |
| virtual void | moment (Real mom, size_t i) |
| virtual Real | combined_moment (size_t i) const |
| virtual void | combined_moment (Real mom, size_t i) |
| virtual void | clear_component_effects () |
| virtual void | compute_component_effects () |
| virtual void | compute_total_effects () |
| virtual const RealVector & | sobol_indices () const |
| virtual const RealVector & | total_sobol_indices () const |
| virtual ULongULongMap | sparse_sobol_index_map () const |
| virtual bool | advancement_available () |
| check if resolution advancement (e.g., order, rank) is available for this approximation instance | |
| virtual bool | diagnostics_available () |
| check if diagnostics are available for this approximation type | |
| virtual Real | diagnostic (const String &metric_type) |
| retrieve a single diagnostic metric for the diagnostic type specified | |
| virtual RealArray | cv_diagnostic (const StringArray &metric_types, unsigned num_folds) |
| retrieve diagnostic metrics for the diagnostic types specified, applying | |
| virtual void | primary_diagnostics (size_t fn_index) |
| compute and print all requested diagnostics and cross-validation | |
| virtual RealArray | challenge_diagnostic (const StringArray &metric_types, const RealMatrix &challenge_points, const RealVector &challenge_responses) |
| compute requested diagnostics for user provided challenge pts | |
| virtual void | challenge_diagnostics (size_t fn_index, const RealMatrix &challenge_points, const RealVector &challenge_responses) |
| compute and print all requested diagnostics for user provided challenge pts | |
| virtual RealVector | approximation_coefficients (bool normalized) const |
| return the coefficient array computed by build()/rebuild() | |
| virtual void | approximation_coefficients (const RealVector &approx_coeffs, bool normalized) |
| set the coefficient array from external sources, rather than computing with build()/rebuild() | |
| virtual void | coefficient_labels (std::vector< std::string > &coeff_labels) const |
| print the coefficient array computed in build()/rebuild() | |
| virtual void | print_coefficients (std::ostream &s, bool normalized) |
| print the coefficient array computed in build()/rebuild() | |
| virtual int | recommended_coefficients () const |
| return the recommended number of samples (unknowns) required to build the derived class approximation type in numVars dimensions | |
| virtual int | num_constraints () const |
| return the number of constraints to be enforced via an anchor point | |
| virtual size_t | num_components () const |
| return the number of approximation components (1 for scalars) | |
| virtual void | expansion_coefficient_flag (bool) |
| virtual bool | expansion_coefficient_flag () const |
| virtual void | expansion_gradient_flag (bool) |
| virtual bool | expansion_gradient_flag () const |
| virtual void | clear_computed_bits () |
| clear tracking of computed moments, due to (expansion) change that invalidates previous results | |
| virtual void | map_variable_labels (const Variables &dfsm_vars) |
| if needed, map passed all variable labels to approximation's labels | |
| int | min_points (bool constraint_flag) const |
| return the minimum number of points required to build the approximation type in numVars dimensions. Uses *_coefficients() and num_constraints(). | |
| int | recommended_points (bool constraint_flag) const |
| return the recommended number of samples to build the approximation type in numVars dimensions (default same as min_points) | |
| void | pop_data (bool save_data) |
| removes entries from end of SurrogateData::{vars,resp}Data (last points appended, or as specified in args) | |
| void | push_data () |
| restores SurrogateData state prior to previous pop() | |
| void | finalize_data () |
| finalize SurrogateData by applying all remaining trial sets | |
| const Pecos::SurrogateData & | surrogate_data () const |
| return approxData | |
| Pecos::SurrogateData & | surrogate_data () |
| return approxData | |
| void | add (const Variables &vars, bool v_copy, const Response &response, size_t fn_index, bool r_copy, bool anchor_flag, int eval_id, size_t key_index=_NPOS) |
| create SurrogateData{Vars,Resp} and append to SurrogateData:: {varsData,respData,dataIdentifiers} | |
| void | add (const Real *c_vars, bool v_copy, const Response &response, size_t fn_index, bool r_copy, bool anchor_flag, int eval_id, size_t key_index=_NPOS) |
| create SurrogateData{Vars,Resp} and append to SurrogateData:: {varsData,respData,dataIdentifiers} | |
| void | add (const Pecos::SurrogateDataVars &sdv, bool v_copy, const Response &response, size_t fn_index, bool r_copy, bool anchor_flag, int eval_id, size_t key_index=_NPOS) |
| create a SurrogateDataResp and append to SurrogateData:: {varsData,respData,dataIdentifiers} | |
| void | add (const Pecos::SurrogateDataVars &sdv, bool v_copy, const Pecos::SurrogateDataResp &sdr, bool r_copy, bool anchor_flag, int eval_id, size_t key_index=_NPOS) |
| append to SurrogateData::{varsData,respData,dataIdentifiers} | |
| void | add_array (const RealMatrix &sample_vars, bool v_copy, const RealVector &sample_resp, bool r_copy, size_t key_index=_NPOS) |
| add surrogate data from the provided sample and response data, assuming continuous variables and function values only More... | |
| void | pop_count (size_t count, size_t key_index) |
| appends to SurrogateData::popCountStack (number of entries to pop from end of SurrogateData::{vars,resp}Data, based on size of last data append) | |
| void | clear_data () |
| clear SurrogateData::{vars,resp}Data for activeKey + embedded keys More... | |
| void | clear_active_data () |
| clear active approximation data | |
| void | clear_inactive_data () |
| clear inactive approximation data | |
| void | clear_active_popped () |
| clear SurrogateData::popped{Vars,Resp}Trials,popCountStack for activeKey | |
| void | clear_popped () |
| clear SurrogateData::popped{Vars,Resp}Trials,popCountStack for all keys | |
| void | set_bounds (const RealVector &c_l_bnds, const RealVector &c_u_bnds, const IntVector &di_l_bnds, const IntVector &di_u_bnds, const RealVector &dr_l_bnds, const RealVector &dr_u_bnds) |
| set approximation lower and upper bounds (currently only used by graphics) | |
| std::shared_ptr< Approximation > | approx_rep () const |
| returns approxRep for access to derived class member functions that are not mapped to the top Approximation level | |
Protected Member Functions | |
| int | min_coefficients () const |
| return the minimum number of samples (unknowns) required to build the derived class approximation type in numVars dimensions | |
| void | build () |
| builds the approximation from scratch | |
| Real | value (const Variables &vars) |
| retrieve the predicted function value for a given parameter set | |
| const RealVector & | gradient (const Variables &vars) |
| retrieve the function gradient at the predicted value for a given parameter set | |
| Real | prediction_variance (const Variables &vars) |
| retrieve the variance of the predicted value for a given parameter set | |
| Protected Member Functions inherited from Approximation | |
| Approximation (BaseConstructor, const ProblemDescDB &problem_db, const SharedApproxData &shared_data, const String &approx_label) | |
| constructor initializes the base class part of letter classes (BaseConstructor overloading avoids infinite recursion in the derived class constructors - Coplien, p. 139) More... | |
| Approximation (NoDBBaseConstructor, const SharedApproxData &shared_data) | |
| constructor initializes the base class part of letter classes (BaseConstructor overloading avoids infinite recursion in the derived class constructors - Coplien, p. 139) More... | |
| std::shared_ptr< Approximation > | get_approx (ProblemDescDB &problem_db, const SharedApproxData &shared_data, const String &approx_label) |
| Used only by the standard envelope constructor to initialize approxRep to the appropriate derived type. More... | |
| std::shared_ptr< Approximation > | get_approx (const SharedApproxData &shared_data) |
| Used only by the alternate envelope constructor to initialize approxRep to the appropriate derived type. More... | |
| Pecos::SurrogateDataVars | variables_to_sdv (const Real *sample_c_vars) |
| create a SurrogateDataVars instance from a Real* | |
| Pecos::SurrogateDataVars | variables_to_sdv (const Variables &vars) |
| create a SurrogateDataVars instance by extracting data from a Variables object | |
| Pecos::SurrogateDataResp | response_to_sdr (const Response &response, size_t fn_index) |
| create a SurrogateDataResp instance by extracting data for a particular QoI from a Response object | |
| void | add (const Pecos::SurrogateDataVars &sdv, bool v_copy, const Pecos::SurrogateDataResp &sdr, bool r_copy, bool anchor_flag) |
| tracks a new data point by appending to SurrogateData::{vars,Resp}Data | |
| void | add (int eval_id) |
| tracks a new data point by appending to SurrogateData::dataIdentifiers | |
| void | check_points (size_t num_build_pts) |
| Check number of build points against minimum required. | |
| void | assign_key_index (size_t key_index) |
| extract and assign i-th embedded active key | |
Private Types | |
| enum | subsurrogate { LS, GP } |
| enum | subsurrogate_basis { polynomial, radial } |
| enum | testfunction { SmoothHerbie, Herbie, Cone, Cross, UnitSphere, Linear34 } |
Private Member Functions | |
| void | VPSmodel_build () |
| Function to compute coefficients governing the VPS surrogates. | |
| void | VPSmodel_apply (const RealVector &new_x, bool variance_flag, bool gradients_flag) |
| Function returns a response value using the VPS surface. More... | |
Private Attributes | |
| Real | approxValue |
| value of the approximation returned by value() | |
| Real | approxVariance |
| value of the approximation returned by prediction_variance() | |
| RealMatrix | trainPoints |
| A 2-D array (num sample sites = rows, num vars = columns) used to create the Gaussian process. | |
| RealMatrix | trainValues |
| An array of response values; one response value per sample site. | |
| size_t | numObs |
| The number of observations on which the GP surface is built. | |
| int | surrogateOrder |
| The order of the polynomial in each Voronoi cell. | |
| subsurrogate | _vps_subsurrogate |
| subsurrogate_basis | _vps_subsurrogate_basis |
| testfunction | _vps_test_function |
| double | Q [1220] |
| int | indx |
| double | cc |
| double | c |
| double | zc |
| double | zx |
| double | zy |
| size_t | qlen |
| size_t | _n_dim |
| double * | _xmin |
| double * | _xmax |
| double | _diag |
| size_t | _num_inserted_points |
| double ** | _sample_points |
| double * | _fval |
| double ** | _fgrad |
| double *** | _fhess |
| size_t ** | _sample_neighbors |
| size_t ** | _vps_ext_neighbors |
| size_t | _vps_order |
| size_t | _num_GMRES |
| size_t * | _num_cell_basis_functions |
| double * | _sample_vsize |
| double * | _vps_dfar |
| double *** | _sample_basis |
| double | _max_vsize |
| double | _disc_min_jump |
| double | _disc_min_grad |
| double | _f_min |
| double | _f_max |
| size_t *** | _vps_t |
| double ** | _vps_w |
| SharedApproxData | sharedData |
| std::vector< Approximation > | gpApproximations |
| Variables | gpEvalVars |
| bool | _use_derivatives |
| bool | _use_gradient |
| bool | _use_hessian |
Static Private Attributes | |
| static VPSApproximation * | VPSinstance |
| pointer to the active object instance used within the static evaluator More... | |
Additional Inherited Members | |
| Protected Attributes inherited from Approximation | |
| Pecos::SurrogateData | approxData |
| contains the variables/response data for constructing a single approximation model (one response function). There is only one SurrogateData instance per Approximation, although it may contain keys for different model forms/resolutions and aggregations (e.g., discrepancies) among forms/resolutions. | |
| RealVector | approxGradient |
| gradient of the approximation returned by gradient() | |
| RealSymMatrix | approxHessian |
| Hessian of the approximation returned by hessian() | |
| String | approxLabel |
| label for approximation, if applicable | |
| std::shared_ptr< SharedApproxData > | sharedDataRep |
| contains the approximation data that is shared among the response set | |
| std::shared_ptr< Approximation > | approxRep |
| pointer to the letter (initialized only for the envelope) | |
Derived approximation class for VPS implementation.
The VPSApproximation class provides a set of piecewise surrogate approximations each of which is valid within a Voronoi cell.
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private |
Function returns a response value using the VPS surface.
The response value is computed at the design point specified by the RealVector function argument.
References VPSApproximation::approxValue.
Referenced by VPSApproximation::gradient(), VPSApproximation::prediction_variance(), and VPSApproximation::value().
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staticprivate |
pointer to the active object instance used within the static evaluator
default constructor
1.8.20