NonDQUESOBayesCalibration Member List

This is the complete list of members for NonDQUESOBayesCalibration, including all inherited members.

acceptanceChain	NonDBayesCalibration	protected
acceptedFnVals	NonDBayesCalibration	protected
accepts_multiple_points() const	Iterator	virtual
active_set(const ActiveSet &set)	Iterator	inline
active_set() const	Iterator	inline
active_set_request_values(short asv_val)	Iterator	inline
active_set_request_vector(const ShortArray &asv)	Iterator	inline
active_set_request_vector() const	Iterator	inline
activeSet	Iterator	protected
adaptExpDesign	NonDBayesCalibration	protected
adaptPosteriorRefine	NonDBayesCalibration	protected
add_lhs_hifi_data()	NonDBayesCalibration	protected
advancedOptionsFile	NonDQUESOBayesCalibration	protected
algorithm_space_model() const	NonDBayesCalibration	inlineprotectedvirtual
all_responses() const	Analyzer	inlinevirtual
all_samples()	Analyzer	inlinevirtual
all_variables()	Analyzer	inlinevirtual
allHeaders	Analyzer	protected
allResponses	Analyzer	protected
allSamples	Analyzer	protected
allVariables	Analyzer	protected
Analyzer()	Analyzer	inlineprotected
Analyzer(ProblemDescDB &problem_db, Model &model)	Analyzer	protected
Analyzer(unsigned short method_name, Model &model)	Analyzer	protected
Analyzer(unsigned short method_name, Model &model, const ShortShortPair &view_override)	Analyzer	protected
Analyzer(unsigned short method_name)	Analyzer	protected
ann_dist(const ANNpointArray matrix1, const ANNpointArray matrix2, RealVector &distances, int NX, int NY, int dim2, IntVector &k, double eps) (defined in NonDBayesCalibration)	NonDBayesCalibration	protectedstatic
ann_dist(const ANNpointArray matrix1, const ANNpointArray matrix2, RealVector &distances, Int2DArray &indices, int NX, int NY, int dim2, IntVector &k, double eps) (defined in NonDBayesCalibration)	NonDBayesCalibration	protectedstatic
apply_error_vec(const RealVector &error_vec, int &seed, int experiment) (defined in NonDBayesCalibration)	NonDBayesCalibration	protected
apply_hifi_sim_error(int &random_seed, int num_exp, int exp_offset=0)	NonDBayesCalibration	protected
archive_allocate_mappings()	NonD	protected
archive_allocate_pdf()	NonD	protected
archive_equiv_hf_evals(const Real equiv_hf_evals)	NonD	protected
archive_from_resp(size_t fn_index, size_t inc_id=0)	NonD	protected
archive_model_response(const Response &, size_t idx) const	Analyzer	inlineprotectedvirtual
archive_model_variables(const Model &, size_t idx) const	Analyzer	inlineprotectedvirtual
archive_pdf(size_t fn_index, size_t inc_id=0)	NonD	protected
archive_sobol_indices() const	Analyzer	protected
archive_to_resp(size_t fn_index, size_t inc_id=0)	NonD	protected
assess_emulator_convergence()	NonDBayesCalibration	protected
assign_rep(std::shared_ptr< Iterator > iterator_rep)	Iterator
augment_gradient_with_log_prior(VectorType1 &log_grad, const VectorType2 &vec)	NonDBayesCalibration	protected
augment_hessian_with_log_prior(MatrixType &log_hess, const VectorType &vec)	NonDBayesCalibration	protected
batchEvals	NonDBayesCalibration	protected
batchSize	NonDBayesCalibration	protected
best_to_all()	NonDBayesCalibration	protected
bestResponseArray	Iterator	protected
bestSamples	NonDBayesCalibration	protected
bestVariablesArray	Iterator	protected
bestVarsRespMap	Analyzer	protected
build_designs(VariablesArray &design_matrix)	NonDBayesCalibration	protected
build_error_matrix(const RealVector &sim_error_vec, RealMatrix &sim_error_matrix, int &seed)	NonDBayesCalibration	protected
build_field_discrepancy() (defined in NonDBayesCalibration)	NonDBayesCalibration	protected
build_GP_field(const RealMatrix &t, RealMatrix &t_pred, const RealVector &concat_disc, RealVector &disc_pred, RealVector &disc_var) (defined in NonDBayesCalibration)	NonDBayesCalibration	protected
build_hi2lo_xmatrix(RealMatrix &Xmatrix, int i, const RealMatrix &mi_chain, RealMatrix &sim_error_matrix)	NonDBayesCalibration	protected
build_model_discrepancy()	NonDBayesCalibration	protected
build_scalar_discrepancy() (defined in NonDBayesCalibration)	NonDBayesCalibration	protected
burnInSamples	NonDBayesCalibration	protected
cache_chain()	NonDQUESOBayesCalibration	protected
calculate_evidence()	NonDBayesCalibration	protected
calculate_kde()	NonDBayesCalibration	protected
calibrate()	NonDQUESOBayesCalibration	protectedvirtual
calibrate_to_hifi()	NonDBayesCalibration	protected
calibrate_with_adaptive_emulator()	NonDBayesCalibration	protected
calibrationData	NonDCalibration	protected
calIpMhOptionsValues	NonDQUESOBayesCalibration	protected
calIpOptionsValues	NonDQUESOBayesCalibration	protected
calModelDiscrepancy	NonDBayesCalibration	protected
calModelEvidence	NonDBayesCalibration	protected
calModelEvidLaplace	NonDBayesCalibration	protected
calModelEvidMC	NonDBayesCalibration	protected
cdfFlag	NonD	protected
chainDiagnostics	NonDBayesCalibration	protected
chainDiagnosticsCI	NonDBayesCalibration	protected
chainSamples	NonDBayesCalibration	protected
chainStats (defined in NonDBayesCalibration)	NonDBayesCalibration	protected
check_sub_iterator_conflict()	Iterator	virtual
choose_batch_from_mutual_info(int random_seed, int num_it, int max_hifi, int num_hifi, RealMatrix &mi_chain, VariablesArray &design_matrix, VariablesArray &optimal_config_matrix, RealVector &MI_vec)	NonDBayesCalibration	protected
compact_mode() const	Analyzer	inlineprotectedvirtual
compactMode	Analyzer	protected
compute_best_metrics(const Response &response, std::pair< Real, Real > &metrics)	Analyzer	private
compute_densities(const RealRealPairArray &min_max_fns, bool prob_refinement=false, bool all_levels_computed=false)	NonD	protected
compute_intervals() (defined in NonDBayesCalibration)	NonDBayesCalibration	protected
compute_prediction_vals(RealMatrix &filtered_fn_vals, RealMatrix &PredVals, int num_filtered, size_t num_exp, size_t num_concatenated) (defined in NonDBayesCalibration)	NonDBayesCalibration	protected
compute_statistics()	NonDBayesCalibration	protectedvirtual
compute_vbd_stats(const size_t num_samples, const IntResponseMap &resp_samples)	Analyzer	protected
computedGenRelLevels	NonD	protected
computedPDFAbscissas	NonD	protected
computedPDFOrdinates	NonD	protected
computedProbLevels	NonD	protected
computedRelLevels	NonD	protected
computedRespLevels	NonD	protected
configLowerBnds	NonDBayesCalibration	protected
configUpperBnds	NonDBayesCalibration	protected
configure_cost(unsigned short num_steps, bool multilevel, RealVector &cost)	NonD	inlineprotected
configure_sequence(size_t &num_steps, size_t &secondary_index, short &seq_type)	NonD	protected
construct_lhs(Iterator &u_space_sampler, Model &u_model, unsigned short sample_type, int num_samples, int seed, const String &rng, bool vary_pattern, short sampling_vars_mode=ACTIVE)	NonD	protected
construct_map_model()	NonDBayesCalibration	protected
construct_map_optimizer()	NonDBayesCalibration	protected
construct_mcmc_model()	NonDBayesCalibration	protected
convergence_tolerance(Real conv_tol)	Iterator	inline
convergence_tolerance() const	Iterator	inline
convergenceTol	Iterator	protected
copy_gsl(const QUESO::GslVector &qv, RealVector &rv)	NonDQUESOBayesCalibration	protected
copy_gsl(const RealVector &rv, QUESO::GslVector &qv)	NonDQUESOBayesCalibration	protected
copy_gsl(const QUESO::GslVector &qv, RealMatrix &rm, int i)	NonDQUESOBayesCalibration	protected
copy_gsl_partial(const QUESO::GslVector &qv, size_t start, RealVector &rv)	NonDQUESOBayesCalibration	protected
copy_gsl_partial(const RealVector &rv, QUESO::GslVector &qv, size_t start)	NonDQUESOBayesCalibration	protected
core_run()	NonDBayesCalibration	protectedvirtual
correctedFieldResponses	NonDBayesCalibration	protected
correctedFieldVariances	NonDBayesCalibration	protected
correctedResponses	NonDBayesCalibration	protected
correctedVariances	NonDBayesCalibration	protected
dakotaLogLikelihood(const QUESO::GslVector &paramValues, const QUESO::GslVector *paramDirection, const void *functionDataPtr, QUESO::GslVector *gradVector, QUESO::GslMatrix *hessianMatrix, QUESO::GslVector *hessianEffect)	NonDQUESOBayesCalibration	protectedstatic
declare_sources()	Iterator	virtual
derived_free_communicators(ParLevLIter pl_iter)	NonDBayesCalibration	protectedvirtual
derived_init_communicators(ParLevLIter pl_iter)	NonDBayesCalibration	protectedvirtual
derived_set_communicators(ParLevLIter pl_iter)	NonDBayesCalibration	protectedvirtual
DerivInformedPropCovLogitTK< QUESO::GslVector, QUESO::GslMatrix > class	NonDQUESOBayesCalibration	friend
DerivInformedPropCovTK< QUESO::GslVector, QUESO::GslMatrix > class	NonDQUESOBayesCalibration	friend
differ(size_t N_alloc_ij, const SizetArray &N_actual_ij) const	NonD	inlineprotected
differ(const SizetArray &N_alloc_i, const Sizet2DArray &N_actual_i) const	NonD	inlineprotected
differ(const Sizet2DArray &N_alloc, const Sizet3DArray &N_actual) const	NonD	inlineprotected
discrepancy_sample_counts() const	NonD	inlineprotectedvirtual
discrepancyFieldResponses	NonDBayesCalibration	protected
discrepancyResponses	NonDBayesCalibration	protected
discrepancyType	NonDBayesCalibration	protected
discrepPolyOrder	NonDBayesCalibration	protected
distribute_levels(RealVectorArray &levels, bool ascending=true)	NonD	private
emulatorType	NonDBayesCalibration	protected
envOptionsValues	NonDQUESOBayesCalibration	protected
epistemicStats	NonD	protected
equal_gsl(const QUESO::GslVector &qv1, const QUESO::GslVector &qv2)	NonDQUESOBayesCalibration	protected
estimate_partition_bounds()	Iterator	virtual
eval_hi2lo_stop(bool &stop_metric, double &prev_MI, const RealVector &MI_vec, int num_hifi, int max_hifi, int num_candidates)	NonDBayesCalibration	protected
eval_tag_prefix(const String &eval_id_str)	Iterator	virtual
evaluate_parameter_sets(Model &model, bool log_resp_flag, bool log_best_flag)	Analyzer	protected
evaluationsDB	Iterator	protected
evaluationsDBState	Iterator	protected
evidenceSamples	NonDBayesCalibration	protected
execNum	Iterator	private
expData	NonDCalibration	protected
export_chain()	NonDBayesCalibration	protected
export_chain(RealMatrix &filtered_chain, RealMatrix &filtered_fn_vals)	NonDBayesCalibration	protected
export_discrepancy(RealMatrix &pred_config_mat)	NonDBayesCalibration	protected
export_field_discrepancy(RealMatrix &pred_vars_mat)	NonDBayesCalibration	protected
export_final_surrogates(Model &data_fit_surr_model)	Iterator	protected
export_posterior_samples_to_file(const std::string filename, const RealMatrix &posterior_data) const (defined in NonDBayesCalibration)	NonDBayesCalibration	protected
exportCorrModelFile	NonDBayesCalibration	protected
exportCorrModelFormat	NonDBayesCalibration	protected
exportCorrVarFile	NonDBayesCalibration	protected
exportCorrVarFormat	NonDBayesCalibration	protected
exportDiscrepFile	NonDBayesCalibration	protected
exportDiscrepFormat	NonDBayesCalibration	protected
exportMCMCFilename	NonDBayesCalibration	protected
exportMCMCFormat	NonDBayesCalibration	protected
exportSurrogate	Iterator	protected
extract_selected_posterior_samples(const std::vector< int > &points_to_keep, const RealMatrix &samples_for_posterior_eval, const RealVector &posterior_density, RealMatrix &posterior_data) const (defined in NonDBayesCalibration)	NonDBayesCalibration	protected
filter_chain(const RealMatrix &acceptance_chain, RealMatrix &filtered_chain, int target_length)	NonDBayesCalibration	protected
filter_chain(const RealMatrix &acceptance_chain, RealMatrix &filtered_chain)	NonDBayesCalibration	protected
filter_chain_by_conditioning() override	NonDQUESOBayesCalibration	protectedvirtual
filter_fnvals(const RealMatrix &accepted_fn_vals, RealMatrix &filtered_fn_vals) (defined in NonDBayesCalibration)	NonDBayesCalibration	protected
filter_matrix_cols(const RealMatrix &orig_matrix, int start_index, int stride, RealMatrix &filtered_matrix)	NonDBayesCalibration	protected
filteredFnVals	NonDBayesCalibration	protected
filteredMCMCFormat (defined in NonDBayesCalibration)	NonDBayesCalibration	protected
final_moments_type() const	NonD	inline
final_moments_type(short type)	NonD	inline
finalize_run()	NonD	inlineprotectedvirtual
finalMomentsType	NonD	protected
finalStatistics	NonD	protected
fnStats (defined in NonDBayesCalibration)	NonDBayesCalibration	protected
free_communicators(ParLevLIter pl_iter)	Iterator
get_iterator(ProblemDescDB &problem_db)	Iterator	private
get_iterator(ProblemDescDB &problem_db, Model &model)	Iterator	private
get_iterator(const String &method_string, Model &model)	Iterator	private
get_parameter_sets(Model &model)	Analyzer	protectedvirtual
get_parameter_sets(Model &model, const size_t num_samples, RealMatrix &design_matrix)	Analyzer	protectedvirtual
get_positive_definite_covariance_from_hessian(const RealSymMatrix &hessian, const RealMatrix &prior_chol_fact, RealSymMatrix &covariance, short output_lev)	NonDBayesCalibration	static
get_positive_definite_covariance_from_hessian(const RealSymMatrix &hessian, RealSymMatrix &covariance)	NonDBayesCalibration	inlineprotected
get_vbd_parameter_sets(Model &model, size_t num_samples)	Analyzer	protected
gnewton_set_recast(const Variables &recast_vars, const ActiveSet &recast_set, ActiveSet &sub_model_set)	Iterator	protectedstatic
hifiModel	NonDBayesCalibration	protected
hifiSampler	NonDBayesCalibration	protected
homogeneous(const SizetArray &N_l) const	NonD	inlineprivate
importCandFormat	NonDBayesCalibration	protected
importCandPtsFile	NonDBayesCalibration	protected
importPredConfigFormat	NonDBayesCalibration	protected
importPredConfigs	NonDBayesCalibration	protected
inflate_approx_samples(const ArrayType &N_l, bool multilev, size_t secondary_index, std::vector< ArrayType > &N_l_vec)	NonD	protected
inflate_sequence_samples(const ArrayType &N_l, bool multilev, size_t secondary_index, std::vector< ArrayType > &N_l_vec)	NonD	protected
init_bayesian_solver() override (defined in NonDQUESOBayesCalibration)	NonDQUESOBayesCalibration	protectedvirtual
init_communicators(ParLevLIter pl_iter)	Iterator
init_hyper_parameters()	NonDBayesCalibration	protected
init_map_optimizer()	NonDBayesCalibration	protected
init_precond_request_value()	NonDQUESOBayesCalibration	protected
init_proposal_covariance() (defined in NonDQUESOBayesCalibration)	NonDQUESOBayesCalibration	protected
init_queso_environment()	NonDQUESOBayesCalibration	protected
initHifiSamples	NonDBayesCalibration	protected
initial_point(const Variables &pt)	Iterator	virtual
initial_point(const RealVector &pt)	Iterator	virtual
initial_points(const VariablesArray &pts)	Iterator	virtual
initial_points() const	Iterator	protectedvirtual
initialize_counts()	NonD	private
initialize_final_statistics()	NonD	protectedvirtual
initialize_graphics(int iterator_server_id=1)	Iterator	virtual
initialize_iterator(int job_index)	Iterator	virtual
initialize_level_mappings()	NonD	protected
initialize_model()	NonDBayesCalibration	protected
initialize_model_graphics(Model &model, int iterator_server_id)	Iterator	protected
initialize_response_covariance()	NonD	protectedvirtual
initialize_run()	NonD	inlineprotectedvirtual
inverseProb	NonDQUESOBayesCalibration	protected
invGammaAlphas	NonDBayesCalibration	protected
invGammaBetas	NonDBayesCalibration	protected
invGammaDists	NonDBayesCalibration	protected
is_null() const	Iterator	inline
iterated_model(const Model &model)	Iterator	inline
iterated_model()	Iterator	inline
iteratedModel	Iterator	protected
Iterator(std::shared_ptr< TraitsBase > traits=std::shared_ptr< TraitsBase >(new TraitsBase()))	Iterator
Iterator(ProblemDescDB &problem_db, std::shared_ptr< TraitsBase > traits=std::shared_ptr< TraitsBase >(new TraitsBase()))	Iterator
Iterator(ProblemDescDB &problem_db, Model &model, std::shared_ptr< TraitsBase > traits=std::shared_ptr< TraitsBase >(new TraitsBase()))	Iterator
Iterator(const String &method_string, Model &model, std::shared_ptr< TraitsBase > traits=std::shared_ptr< TraitsBase >(new TraitsBase()))	Iterator
Iterator(const Iterator &iterator)	Iterator
Iterator(BaseConstructor, ProblemDescDB &problem_db, std::shared_ptr< TraitsBase > traits=std::shared_ptr< TraitsBase >(new TraitsBase()))	Iterator	protected
Iterator(NoDBBaseConstructor, unsigned short method_name, Model &model, std::shared_ptr< TraitsBase > traits=std::shared_ptr< TraitsBase >(new TraitsBase()))	Iterator	protected
Iterator(NoDBBaseConstructor, unsigned short method_name, std::shared_ptr< TraitsBase > traits=std::shared_ptr< TraitsBase >(new TraitsBase()))	Iterator	protected
Iterator(NoDBBaseConstructor, Model &model, size_t max_iter, size_t max_eval, Real conv_tol, std::shared_ptr< TraitsBase > traits=std::shared_ptr< TraitsBase >(new TraitsBase()))	Iterator	protected
iterator_rep() const	Iterator	inline
iteratorRep	Iterator	private
kl_est (defined in NonDBayesCalibration)	NonDBayesCalibration	protected
kl_post_prior(RealMatrix &acceptanceChain)	NonDBayesCalibration	protected
knn_kl_div(RealMatrix &distX_samples, RealMatrix &distY_samples, size_t dim) (defined in NonDBayesCalibration)	NonDBayesCalibration	static
knn_mutual_info(RealMatrix &Xmatrix, int dimX, int dimY, unsigned short alg) (defined in NonDBayesCalibration)	NonDBayesCalibration	static
level_mappings_file(size_t fn_index, const String &qoi_label) const	NonD	private
likelihoodFunctionObj (defined in NonDQUESOBayesCalibration)	NonDQUESOBayesCalibration	protected
linear_constraints(const RealMatrix &lin_ineq_coeffs, const RealVector &lin_ineq_lb, const RealVector &lin_ineq_ub, const RealMatrix &lin_eq_coeffs, const RealVector &lin_eq_tgt)	Iterator	virtual
load_pilot_sample(const SizetArray &pilot_spec, size_t num_steps, SizetArray &delta_N_l)	NonD	protected
load_pilot_sample(const SizetArray &pilot_spec, short seq_type, const Sizet3DArray &N_l, Sizet2DArray &delta_N_l)	NonD	protected
log_best()	NonDQUESOBayesCalibration	protected
log_likelihood(const RealVector &residuals, const RealVector &hyper_params)	NonDBayesCalibration	protected
log_prior_density(const VectorType &vec)	NonDBayesCalibration
log_prior_density(const RealVector &vec) (defined in NonDBayesCalibration)	NonDBayesCalibration	inline
logitTransform	NonDQUESOBayesCalibration	protected
map_pre_solve() override (defined in NonDQUESOBayesCalibration)	NonDQUESOBayesCalibration	protectedvirtual
mapOptAlgOverride	NonDBayesCalibration	protected
mapOptimizer	NonDBayesCalibration	protected
mapSoln	NonDBayesCalibration	protected
maxEvalConcurrency	Iterator	protected
maxFunctionEvals	Iterator	protected
maxHifiEvals	NonDBayesCalibration	protected
maximum_evaluation_concurrency() const	Iterator	inline
maximum_evaluation_concurrency(int max_conc)	Iterator	inline
maximum_iterations() const	Iterator	inline
maximum_iterations(size_t max_iter)	Iterator	inline
maxIterations	Iterator	protected
mcmcDerivOrder	NonDBayesCalibration	protected
mcmcModel	NonDBayesCalibration	protected
mcmcModelHasSurrogate	NonDBayesCalibration	protected
mcmcType	NonDQUESOBayesCalibration	protected
method_enum_to_string(unsigned short method_enum) const	Iterator
method_id() const	Iterator	inline
method_name(unsigned short m_name)	Iterator	inline
method_name() const	Iterator	inline
method_recourse()	Iterator	virtual
method_string(const String &m_str)	Iterator	inline
method_string() const	Iterator	inline
method_string_to_enum(const String &method_str) const	Iterator
methodId	Iterator	private
methodName	Iterator	protected
methodPCIter	Iterator	protected
methodPCIterMap	Iterator	private
methodTraits	Iterator	protected
miPLIndex	NonD	protected
momentStats	NonD	protected
mutual_info_buildX() (defined in NonDBayesCalibration)	NonDBayesCalibration	protected
mutualInfoAlg	NonDBayesCalibration	protected
myModelLayers	Iterator	protected
neg_log_post_resp_mapping(const Variables &model_vars, const Variables &nlpost_vars, const Response &model_resp, Response &nlpost_resp)	NonDBayesCalibration	protectedstatic
negLogPostModel	NonDBayesCalibration	protected
nested_response_mappings(const RealMatrix &primary_coeffs, const RealMatrix &secondary_coeffs)	Iterator	virtual
nested_variable_mappings(const SizetArray &c_index1, const SizetArray &di_index1, const SizetArray &ds_index1, const SizetArray &dr_index1, const ShortArray &c_target2, const ShortArray &di_target2, const ShortArray &ds_target2, const ShortArray &dr_target2)	Iterator	virtual
no_spec_id()	Iterator	privatestatic
NonD(ProblemDescDB &problem_db, Model &model)	NonD	protected
NonD(unsigned short method_name, Model &model)	NonD	protected
NonD(unsigned short method_name, Model &model, const ShortShortPair &approx_view)	NonD	protected
NonD(unsigned short method_name, const RealVector &lower_bnds, const RealVector &upper_bnds)	NonD	protected
NonDBayesCalibration(ProblemDescDB &problem_db, Model &model)	NonDBayesCalibration
nonDBayesInstance	NonDBayesCalibration	protectedstatic
NonDCalibration(ProblemDescDB &problem_db, Model &model)	NonDCalibration
nondInstance	NonD	protectedstatic
NonDQUESOBayesCalibration(ProblemDescDB &problem_db, Model &model)	NonDQUESOBayesCalibration
nonDQUESOInstance	NonDQUESOBayesCalibration	protectedstatic
nonlinear_constraints(const RealVector &nln_ineq_lb, const RealVector &nln_ineq_ub, const RealVector &nln_eq_tgt)	Iterator	virtual
noSpecIdNum	Iterator	privatestatic
num_final_solutions() const	Iterator	inline
num_final_solutions(size_t num_final)	Iterator	inline
num_samples() const	Analyzer	inlinevirtual
numCandidates	NonDBayesCalibration	protected
numCAUV	NonD	protected
numContinuousVars	Analyzer	protected
numDiscreteIntVars	Analyzer	protected
numDiscreteRealVars	Analyzer	protected
numDiscreteStringVars	Analyzer	protected
numFinalSolutions	Iterator	protected
numFunctions	Analyzer	protected
numHyperparams	NonDBayesCalibration	protected
numLSqTerms	Analyzer	protected
numObjFns	Analyzer	protected
numPredConfigs	NonDBayesCalibration	protected
obsErrorMultiplierMode	NonDBayesCalibration	protected
one_sided_delta(Real current, Real target)	NonD	inlineprotected
one_sided_delta(const SizetArray &current, const RealVector &targets, size_t power)	NonD	inlineprotected
one_sided_delta(const SizetArray &current, Real target, size_t power)	NonD	inlineprotected
operator=(const Iterator &iterator)	Iterator
output_level(short out_lev)	Iterator	inline
output_level() const	Iterator	inline
outputLevel	Iterator	protected
pack_parameters_buffer(MPIPackBuffer &send_buffer, int job_index)	Iterator	virtual
pack_results_buffer(MPIPackBuffer &send_buffer, int job_index)	Iterator	virtual
parallel_configuration_iterator(ParConfigLIter pc_iter)	Iterator	inline
parallel_configuration_iterator() const	Iterator	inline
parallel_configuration_iterator_map(std::map< size_t, ParConfigLIter > pci_map)	Iterator	inline
parallel_configuration_iterator_map() const	Iterator	inline
parallel_library() const	Iterator	inline
parallelLib	Iterator	protected
paramDomain	NonDQUESOBayesCalibration	protected
paramInitials	NonDQUESOBayesCalibration	protected
paramSpace	NonDQUESOBayesCalibration	protected
pdf_output() const	NonD	inline
pdf_output(bool output)	NonD	inline
pdfComputed	NonD	protected
pdfOutput	NonD	protected
post_input()	Iterator	virtual
post_run(std::ostream &s)	Analyzer	protectedvirtual
posteriorStatsKDE	NonDBayesCalibration	protected
posteriorStatsKL	NonDBayesCalibration	protected
posteriorStatsMutual	NonDBayesCalibration	protected
postRv	NonDQUESOBayesCalibration	protected
pre_output()	Analyzer	protectedvirtual
pre_run()	NonDBayesCalibration	protectedvirtual
precondition_proposal(unsigned int chain_index)	NonDQUESOBayesCalibration	protected
precondRequestValue	NonDQUESOBayesCalibration	protected
predictionConfigList	NonDBayesCalibration	protected
predVals	NonDBayesCalibration	protected
prevCoeffs	NonDBayesCalibration	protected
prevNondInstance	NonD	protected
print_batch_means_intervals(std::ostream &s) (defined in NonDBayesCalibration)	NonDBayesCalibration	protected
print_chain_diagnostics(std::ostream &s) (defined in NonDBayesCalibration)	NonDBayesCalibration	protected
print_densities(std::ostream &s) const	NonD	inlineprotected
print_densities(std::ostream &s, String qoi_type, const StringArray &pdf_labels) const	NonD	protected
print_hi2lo_batch_status(int num_it, int batch_n, int batchEvals, const Variables &optimal_config, double max_MI) (defined in NonDBayesCalibration)	NonDBayesCalibration	protected
print_hi2lo_begin(int num_it)	NonDBayesCalibration	protected
print_hi2lo_chain_moments() (defined in NonDBayesCalibration)	NonDBayesCalibration	protected
print_hi2lo_file(std::ostream &out_file, int num_it, const VariablesArray &optimal_config_matrix, const RealVector &MI_vec, RealMatrix &resp_matrix)	NonDBayesCalibration	protected
print_hi2lo_selected(int num_it, const VariablesArray &optimal_config_matrix, const RealVector &MI_vec) (defined in NonDBayesCalibration)	NonDBayesCalibration	protected
print_hi2lo_status(int num_it, int i, const Variables &xi_i, double MI) (defined in NonDBayesCalibration)	NonDBayesCalibration	protected
print_intervals_file(std::ostream &stream, RealMatrix &functionvalsT, RealMatrix &predvalsT, int length, size_t aug_length) (defined in NonDBayesCalibration)	NonDBayesCalibration	protected
print_intervals_screen(std::ostream &stream, RealMatrix &functionvalsT, RealMatrix &predvalsT, int length) (defined in NonDBayesCalibration)	NonDBayesCalibration	protected
print_kl(std::ostream &stream) (defined in NonDBayesCalibration)	NonDBayesCalibration	protected
print_level_map(std::ostream &s, size_t fn_index, const String &qoi_label) const	NonD	private
print_level_mappings(std::ostream &s) const	NonD	inline
print_level_mappings(std::ostream &s, String qoi_type, const StringArray &qoi_labels) const	NonD
print_level_mappings(std::ostream &s, const RealVector &level_maps, bool moment_offset, const String &prepend="")	NonD
print_multilevel_discrepancy_summary(std::ostream &s, const SizetArray &N_m)	NonD	protected
print_multilevel_discrepancy_summary(std::ostream &s, const SizetArray &N_m, const SizetArray &N_mp1)	NonD	protected
print_multilevel_discrepancy_summary(std::ostream &s, const Sizet2DArray &N_m)	NonD	protected
print_multilevel_discrepancy_summary(std::ostream &s, const Sizet2DArray &N_m, const Sizet2DArray &N_mp1)	NonD	protected
print_multilevel_evaluation_summary(std::ostream &s, const SizetArray &N_m)	NonD	protected
print_multilevel_evaluation_summary(std::ostream &s, const Sizet2DArray &N_m)	NonD	protected
print_multilevel_model_summary(std::ostream &s, const std::vector< ArrayType > &N_samp, String type, short seq_type, bool discrep_flag)	NonD	protected
print_multilevel_row(std::ostream &s, const SizetArray &N_j)	NonD	private
print_multilevel_row(std::ostream &s, const SizetArray &N_j, const SizetArray &N_jp1)	NonD	private
print_results(std::ostream &s, short results_state=FINAL_RESULTS) override	NonDQUESOBayesCalibration	protectedvirtual
print_sobol_indices(std::ostream &s) const	Analyzer	protected
print_system_mappings(std::ostream &s) const	NonD	protected
print_variables(std::ostream &s, const RealVector &c_vars)	NonDBayesCalibration	protected
prior_cholesky_factorization()	NonDBayesCalibration	protected
prior_density(const VectorType &vec)	NonDBayesCalibration
prior_density(const RealVector &vec) (defined in NonDBayesCalibration)	NonDBayesCalibration	inline
prior_mean(VectorType &mean_vec) const	NonDBayesCalibration
prior_proposal_covariance()	NonDQUESOBayesCalibration	protected
prior_sample(Engine &rng, RealVector &prior_samples)	NonDBayesCalibration
prior_sample_matrix(RealMatrix &prior_dist_samples) (defined in NonDBayesCalibration)	NonDBayesCalibration	protected
prior_variance(MatrixType &var_mat) const	NonDBayesCalibration
priorCovCholFactor	NonDBayesCalibration	protected
priorPropCovMult	NonDQUESOBayesCalibration	protected
priorRv	NonDQUESOBayesCalibration	protected
probDescDB	Iterator	protected
problem_description_db() const	Iterator	inline
propCovUpdatePeriod	NonDQUESOBayesCalibration	protected
proposalCovarData	NonDBayesCalibration	protected
proposalCovarFilename	NonDBayesCalibration	protected
proposalCovarInputType	NonDBayesCalibration	protected
proposalCovarType	NonDBayesCalibration	protected
proposalCovMatrix	NonDQUESOBayesCalibration	protected
pull_level_mappings(RealVector &level_maps, size_t offset)	NonD	protected
push_level_mappings(const RealVector &level_maps, size_t offset)	NonD	protected
query_cost(unsigned short num_steps, bool multilevel, RealVector &cost)	NonD	protected
query_cost(unsigned short num_steps, Model &model, RealVector &cost)	NonD	protected
quesoEnv	NonDQUESOBayesCalibration	protected
random_seed(int seed)	Iterator	virtual
randomSeed	NonDBayesCalibration	protected
read_variables_responses(int num_evals, size_t num_vars)	Analyzer	protected
readFieldCoords	NonDBayesCalibration	protected
recast_model_view(const ShortShortPair &view_override)	Analyzer	private
requested_levels(const RealVectorArray &req_resp_levels, const RealVectorArray &req_prob_levels, const RealVectorArray &req_rel_levels, const RealVectorArray &req_gen_rel_levels, short resp_lev_tgt, short resp_lev_tgt_reduce, bool cdf_flag, bool pdf_output)	NonD
requestedGenRelLevels	NonD	protected
requestedProbLevels	NonD	protected
requestedRelLevels	NonD	protected
requestedRespLevels	NonD	protected
reset()	Iterator	virtual
residualModel	NonDBayesCalibration	protected
resize()	NonDCalibration	virtual
resize_communicators(ParLevLIter pl_iter, bool reinit_comms)	Iterator
resize_final_statistics_gradients()	NonD	protected
respLevelTarget	NonD	protected
respLevelTargetReduce	NonD	protected
response_array_results()	Analyzer	inlineprotectedvirtual
response_error_estimates() const	Iterator	virtual
response_results() const	NonD	inlineprotectedvirtual
response_results_active_set(const ActiveSet &set)	NonD	inlineprotectedvirtual
resultsDB	Iterator	protected
resultsNames	Iterator	protected
returns_multiple_points() const	Analyzer	inlineprotectedvirtual
run(ParLevLIter pl_iter)	Iterator
run()	Iterator
run_chain()	NonDQUESOBayesCalibration	protected
run_hifi(const VariablesArray &optimal_config_matrix, RealMatrix &resp_matrix)	NonDBayesCalibration	protected
run_identifier() const	Iterator	protected
run_queso_solver()	NonDQUESOBayesCalibration	protected
S4	Analyzer	private
sample_to_variables(const Real *sample_vars, Variables &vars)	Analyzer	protectedvirtual
samples_to_variables_array(const RealMatrix &sample_matrix, VariablesArray &vars_array)	Analyzer	protected
sampling_increment()	Iterator	virtual
sampling_reference(size_t samples_ref)	Iterator	virtual
sampling_reset(size_t min_samples, bool all_data_flag, bool stats_flag)	Iterator	virtual
sampling_scheme() const	Iterator	virtual
scalarDataFilename (defined in NonDBayesCalibration)	NonDBayesCalibration	protected
scale_model()	NonDBayesCalibration	protected
scaleFlag	NonDBayesCalibration	protected
set_communicators(ParLevLIter pl_iter)	Iterator
set_ip_options()	NonDQUESOBayesCalibration	protected
set_mh_options()	NonDQUESOBayesCalibration	protected
specify_likelihood() override (defined in NonDQUESOBayesCalibration)	NonDQUESOBayesCalibration	protectedvirtual
specify_posterior() override (defined in NonDQUESOBayesCalibration)	NonDQUESOBayesCalibration	protectedvirtual
specify_prior() override	NonDQUESOBayesCalibration	protectedvirtual
standardizedSpace	NonDBayesCalibration	protected
startCAUV	NonD	protected
stochExpIterator	NonDBayesCalibration	protected
sub_iterator_flag(bool si_flag)	Iterator
sub_optimizer_select(unsigned short requested_sub_method, unsigned short default_sub_method=SUBMETHOD_NPSOL)	NonD	protected
subIteratorFlag	Iterator	protected
submethod_enum_to_string(unsigned short submethod_enum) const	Iterator
subSamplingPeriod	NonDBayesCalibration	protected
summary_output(bool summary_output_flag)	Iterator	inline
summaryOutputFlag	Iterator	protected
surrExportFormat	Iterator	protected
surrExportPrefix	Iterator	protected
T4	Analyzer	private
top_level()	Iterator
top_level(bool tflag)	Iterator
topLevel	Iterator	protected
totalLevelRequests	NonD	protected
traits() const	Iterator	inline
unpack_parameters_buffer(MPIUnpackBuffer &recv_buffer, int job_index)	Iterator	virtual
unpack_parameters_initialize(MPIUnpackBuffer &recv_buffer, int job_index)	Iterator	virtual
unpack_results_buffer(MPIUnpackBuffer &recv_buffer, int job_index)	Iterator	virtual
update_aleatory_final_statistics()	NonD	protected
update_best(const Variables &vars, int eval_id, const Response &response)	Analyzer	private
update_best(const Real *sample_c_vars, int eval_id, const Response &response)	Analyzer	private
update_chain_size(unsigned int size)	NonDQUESOBayesCalibration	protected
update_final_statistics()	NonD	protectedvirtual
update_from_model(const Model &model)	Analyzer	protectedvirtual
update_local_results(int job_index)	Iterator	virtual
update_model()	NonDBayesCalibration	protected
update_model_from_sample(Model &model, const Real *sample_vars)	Analyzer	protectedvirtual
update_model_from_variables(Model &model, const Variables &vars)	Analyzer	protectedvirtual
update_system_final_statistics()	NonD	protected
update_system_final_statistics_gradients()	NonD	protected
user_auto_id()	Iterator	privatestatic
user_proposal_covariance(const String &input_fmt, const RealVector &cov_data, const String &cov_filename)	NonDQUESOBayesCalibration	protected
uses_method() const	Iterator	virtual
valid_cost_values(const RealVector &cost)	NonD	protected
validate_proposal() (defined in NonDQUESOBayesCalibration)	NonDQUESOBayesCalibration	protected
variable_bounds(const RealVector &cv_lower_bnds, const RealVector &cv_upper_bnds)	Iterator	virtual
variables_array_results()	Analyzer	inlineprotectedvirtual
variables_array_to_samples(const VariablesArray &vars_array, RealMatrix &sample_matrix)	Analyzer	protected
variables_results() const	Analyzer	inlineprotectedvirtual
variables_to_sample(const Variables &vars, Real *sample_c_vars)	Analyzer	protectedvirtual
vary_pattern(bool pattern_flag)	Analyzer	virtual
vbdDropTol	Analyzer	private
weight_model()	NonDBayesCalibration	protected
weightFlag	NonDBayesCalibration	protected
writePrecision	Analyzer	private
zeros(const SizetArray &N_m) const	NonD	inlineprivate
zeros(const Sizet2DArray &N_m) const	NonD	inlineprivate
~Analyzer()	Analyzer	inlineprotected
~Iterator()	Iterator	virtual
~NonD()	NonD	inlineprotected
~NonDBayesCalibration()	NonDBayesCalibration
~NonDCalibration()	NonDCalibration
~NonDQUESOBayesCalibration()	NonDQUESOBayesCalibration