NonDSampling Class Reference

Base class for common code between NonDLHSSampling, NonDAdaptImpSampling, and other specializations. More...

Inheritance diagram for NonDSampling:

Public Member Functions
	NonDSampling (Model &model, const RealMatrix &sample_matrix)
	alternate constructor for evaluating and computing statistics for the provided set of samples More...
	~NonDSampling ()
	destructor
void	compute_statistics (const RealMatrix &vars_samples, const IntResponseMap &resp_samples)
	For the input sample set, computes mean, standard deviation, and probability/reliability/response levels (aleatory uncertainties) or intervals (epsitemic or mixed uncertainties)
void	compute_intervals (RealRealPairArray &extreme_fns)
	called by compute_statistics() to calculate min/max intervals using allResponses
void	compute_intervals (const IntResponseMap &samples)
	called by compute_statistics() to calculate extremeValues from samples
void	compute_intervals (RealRealPairArray &extreme_fns, const IntResponseMap &samples)
	called by compute_statistics() to calculate min/max intervals using samples
void	compute_moments (const RealVectorArray &fn_samples)
	calculates sample moments from a matrix of observations for a set of QoI
void	compute_moments (const IntResponseMap &samples)
	calculate sample moments and confidence intervals from a map of response observations
void	compute_moments (const IntResponseMap &samples, RealMatrix &moment_stats, RealMatrix &moment_grads, RealMatrix &moment_conf_ints, short moments_type, const StringArray &labels)
	convert IntResponseMap to RealVectorArray and invoke helpers
void	compute_moment_gradients (const RealVectorArray &fn_samples, const RealMatrixArray &grad_samples, const RealMatrix &moment_stats, RealMatrix &moment_grads, short moments_type)
	compute moment_grads from function and gradient samples
void	compute_moment_confidence_intervals (const RealMatrix &moment_stats, RealMatrix &moment_conf_ints, const SizetArray &sample_counts, short moments_type)
	compute moment confidence intervals from moment values
void	archive_moments (size_t inc_id=0)
	archive moment statistics in results DB
void	archive_moment_confidence_intervals (size_t inc_id=0)
	archive moment confidence intervals in results DB
void	archive_std_regress_coeffs ()
	archive standardized regression coefficients in results DB
void	archive_extreme_responses (size_t inc_id=0)
	archive extreme values (epistemic result) in results DB
void	compute_level_mappings (const IntResponseMap &samples)
	called by compute_statistics() to calculate CDF/CCDF mappings of z to p/beta and of p/beta to z as well as PDFs More...
void	print_statistics (std::ostream &s) const
	prints the statistics computed in compute_statistics()
void	print_intervals (std::ostream &s) const
	prints the intervals computed in compute_intervals() with default qoi_type and moment_labels
void	print_intervals (std::ostream &s, String qoi_type, const StringArray &interval_labels) const
	prints the intervals computed in compute_intervals()
void	print_moments (std::ostream &s) const
	prints the moments computed in compute_moments() with default qoi_type and moment_labels
void	print_moments (std::ostream &s, String qoi_type, const StringArray &moment_labels) const
	prints the moments computed in compute_moments()
void	print_wilks_stastics (std::ostream &s) const
	prints the Wilks stastics
void	print_tolerance_intervals_statistics (std::ostream &s) const
	prints the tolerance intervals stastics
void	archive_tolerance_intervals (size_t inc_id=0)
	archive the tolerance intervals statistics in results DB
void	update_final_statistics ()
	update finalStatistics from minValues/maxValues, momentStats, and computedProbLevels/computedRelLevels/computedRespLevels
void	transform_samples (Model &src_model, Model &tgt_model, bool x_to_u=true)
	transform allSamples using configuration data from the source and target models
void	transform_samples (Pecos::ProbabilityTransformation &nataf, bool x_to_u=true)
	alternate version to transform allSamples. This is needed since random variable distribution parameters are not updated until run time and an imported sample_matrix is typically in x-space. More...
void	transform_samples (Pecos::ProbabilityTransformation &nataf, RealMatrix &sample_matrix, bool x_to_u=true)
	transform the specified samples matrix from x to u or u to x, assuming identical view and ids
void	transform_samples (Pecos::ProbabilityTransformation &nataf, RealMatrix &sample_matrix, SizetMultiArrayConstView src_cv_ids, SizetMultiArrayConstView tgt_cv_ids, bool x_to_u=true)
	transform the specified samples matrix from x to u or u to x
unsigned short	sampling_scheme () const
	return sampleType
const String &	random_number_generator () const
	return rngName
Public Member Functions inherited from NonD
void	requested_levels (const RealVectorArray &req_resp_levels, const RealVectorArray &req_prob_levels, const RealVectorArray &req_rel_levels, const RealVectorArray &req_gen_rel_levels, short resp_lev_tgt, short resp_lev_tgt_reduce, bool cdf_flag, bool pdf_output)
	set requestedRespLevels, requestedProbLevels, requestedRelLevels, requestedGenRelLevels, respLevelTarget, cdfFlag, and pdfOutput (used in combination with alternate ctors)
void	print_level_mappings (std::ostream &s) const
	prints the z/p/beta/beta* mappings reflected in {requested,computed}{Resp,Prob,Rel,GenRel}Levels for default qoi_type and qoi_labels
void	print_level_mappings (std::ostream &s, String qoi_type, const StringArray &qoi_labels) const
	prints the z/p/beta/beta* mappings reflected in {requested,computed}{Resp,Prob,Rel,GenRel}Levels More...
void	print_level_mappings (std::ostream &s, const RealVector &level_maps, bool moment_offset, const String &prepend="")
	print level mapping statistics using optional pre-pend More...
bool	resize ()
	reinitializes iterator based on new variable size
bool	pdf_output () const
	get pdfOutput
void	pdf_output (bool output)
	set pdfOutput
short	final_moments_type () const
	get finalMomentsType
void	final_moments_type (short type)
	set finalMomentsType
Public Member Functions inherited from Analyzer
const VariablesArray &	all_variables ()
	return the complete set of evaluated variables
const RealMatrix &	all_samples ()
	return the complete set of evaluated samples
const IntResponseMap &	all_responses () const
	return the complete set of computed responses
Public Member Functions inherited from Iterator
	Iterator (std::shared_ptr< TraitsBase > traits=std::shared_ptr< TraitsBase >(new TraitsBase()))
	default constructor More...
	Iterator (ProblemDescDB &problem_db, std::shared_ptr< TraitsBase > traits=std::shared_ptr< TraitsBase >(new TraitsBase()))
	standard envelope constructor, which constructs its own model(s) More...
	Iterator (ProblemDescDB &problem_db, Model &model, std::shared_ptr< TraitsBase > traits=std::shared_ptr< TraitsBase >(new TraitsBase()))
	alternate envelope constructor which uses the ProblemDescDB but accepts a model from a higher level (meta-iterator) context, instead of constructing its own More...
	Iterator (const String &method_string, Model &model, std::shared_ptr< TraitsBase > traits=std::shared_ptr< TraitsBase >(new TraitsBase()))
	alternate envelope constructor for instantiations by name without the ProblemDescDB More...
	Iterator (const Iterator &iterator)
	copy constructor More...
virtual	~Iterator ()
	destructor
Iterator	operator= (const Iterator &iterator)
	assignment operator
virtual void	derived_free_communicators (ParLevLIter pl_iter)
	derived class contributions to freeing the communicators associated with this Iterator instance
virtual void	post_input ()
	read tabular data for post-run mode
virtual void	reset ()
	restore initial state for repeated sub-iterator executions
virtual void	nested_variable_mappings (const SizetArray &c_index1, const SizetArray &di_index1, const SizetArray &ds_index1, const SizetArray &dr_index1, const ShortArray &c_target2, const ShortArray &di_target2, const ShortArray &ds_target2, const ShortArray &dr_target2)
	set primaryA{CV,DIV,DRV}MapIndices, secondaryA{CV,DIV,DRV}MapTargets within derived Iterators; supports computation of higher-level sensitivities in nested contexts (e.g., derivatives of statistics w.r.t. inserted design variables)
virtual void	nested_response_mappings (const RealMatrix &primary_coeffs, const RealMatrix &secondary_coeffs)
	set primaryResponseCoefficients, secondaryResponseCoefficients within derived Iterators; Necessary for scalarization case in MLMC NonDMultilevelSampling to map scalarization in nested context
virtual void	initialize_iterator (int job_index)
	used by IteratorScheduler to set the starting data for a run
virtual void	pack_parameters_buffer (MPIPackBuffer &send_buffer, int job_index)
	used by IteratorScheduler to pack starting data for an iterator run
virtual void	unpack_parameters_buffer (MPIUnpackBuffer &recv_buffer, int job_index)
	used by IteratorScheduler to unpack starting data for an iterator run
virtual void	unpack_parameters_initialize (MPIUnpackBuffer &recv_buffer, int job_index)
	used by IteratorScheduler to unpack starting data and initialize an iterator run
virtual void	pack_results_buffer (MPIPackBuffer &send_buffer, int job_index)
	used by IteratorScheduler to pack results data from an iterator run
virtual void	unpack_results_buffer (MPIUnpackBuffer &recv_buffer, int job_index)
	used by IteratorScheduler to unpack results data from an iterator run
virtual void	update_local_results (int job_index)
	used by IteratorScheduler to update local results arrays
virtual bool	accepts_multiple_points () const
	indicates if this iterator accepts multiple initial points. Default return is false. Override to return true if appropriate.
virtual void	initial_point (const Variables &pt)
	sets the initial point for this iterator (user-functions mode for which Model updating is not used)
virtual void	initial_point (const RealVector &pt)
	sets the initial point (active continuous variables) for this iterator (user-functions mode for which Model updating is not used)
virtual void	initial_points (const VariablesArray &pts)
	sets the multiple initial points for this iterator. This should only be used if accepts_multiple_points() returns true.
virtual void	update_callback_data (const RealVector &cv_initial, const RealVector &cv_lower_bnds, const RealVector &cv_upper_bnds, const RealMatrix &lin_ineq_coeffs, const RealVector &lin_ineq_lb, const RealVector &lin_ineq_ub, const RealMatrix &lin_eq_coeffs, const RealVector &lin_eq_tgt, const RealVector &nln_ineq_lb, const RealVector &nln_ineq_ub, const RealVector &nln_eq_tgt)
	assign variable values and bounds and constraint coefficients and bounds for this iterator (user-functions mode for which iteratedModel is null)
virtual const RealMatrix &	callback_linear_ineq_coefficients () const
	return linear constraint coefficients for this iterator (user-functions mode for which iteratedModel is null)
virtual const RealVector &	callback_linear_ineq_lower_bounds () const
	return linear constraint lower bounds for this iterator (user-functions mode for which iteratedModel is null)
virtual const RealVector &	callback_linear_ineq_upper_bounds () const
	return linear constraint upper bounds for this iterator (user-functions mode for which iteratedModel is null)
virtual void	initialize_graphics (int iterator_server_id=1)
	initialize the 2D graphics window and the tabular graphics data More...
virtual void	check_sub_iterator_conflict ()
	detect any conflicts due to recursive use of the same Fortran solver More...
virtual unsigned short	uses_method () const
	return name of any enabling iterator used by this iterator
virtual void	method_recourse (unsigned short method_name)
	perform a method switch, if possible, due to a detected conflict with the simultaneous use of method_name at an higher-level
virtual void	sampling_increment ()
	increment to next in sequence of refinement samples
virtual IntIntPair	estimate_partition_bounds ()
	estimate the minimum and maximum partition sizes that can be utilized by this Iterator
virtual void	declare_sources ()
	Declare sources to the evaluations database.
void	init_communicators (ParLevLIter pl_iter)
	initialize the communicators associated with this Iterator instance
void	set_communicators (ParLevLIter pl_iter)
	set the communicators associated with this Iterator instance
void	free_communicators (ParLevLIter pl_iter)
	free the communicators associated with this Iterator instance
void	resize_communicators (ParLevLIter pl_iter, bool reinit_comms)
	Resize the communicators. This is called from the letter's resize()
void	parallel_configuration_iterator (ParConfigLIter pc_iter)
	set methodPCIter
ParConfigLIter	parallel_configuration_iterator () const
	return methodPCIter
void	parallel_configuration_iterator_map (std::map< size_t, ParConfigLIter > pci_map)
	set methodPCIterMap
std::map< size_t, ParConfigLIter >	parallel_configuration_iterator_map () const
	return methodPCIterMap
void	run (ParLevLIter pl_iter)
	invoke set_communicators(pl_iter) prior to run()
void	run ()
	orchestrate initialize/pre/core/post/finalize phases More...
void	assign_rep (std::shared_ptr< Iterator > iterator_rep)
	replaces existing letter with a new one More...
void	iterated_model (const Model &model)
	set the iteratedModel (iterators and meta-iterators using a single model instance)
Model &	iterated_model ()
	return the iteratedModel (iterators & meta-iterators using a single model instance)
ProblemDescDB &	problem_description_db () const
	return the problem description database (probDescDB)
ParallelLibrary &	parallel_library () const
	return the parallel library (parallelLib)
void	method_name (unsigned short m_name)
	set the method name to an enumeration value
unsigned short	method_name () const
	return the method name via its native enumeration value
void	method_string (const String &m_str)
	set the method name by string
String	method_string () const
	return the method name by string
String	method_enum_to_string (unsigned short method_enum) const
	convert a method name enumeration value to a string
unsigned short	method_string_to_enum (const String &method_str) const
	convert a method name string to an enumeration value
String	submethod_enum_to_string (unsigned short submethod_enum) const
	convert a sub-method name enumeration value to a string
const String &	method_id () const
	return the method identifier (methodId)
int	maximum_evaluation_concurrency () const
	return the maximum evaluation concurrency supported by the iterator
void	maximum_evaluation_concurrency (int max_conc)
	set the maximum evaluation concurrency supported by the iterator
size_t	maximum_iterations () const
	return the maximum iterations for this iterator
void	maximum_iterations (size_t max_iter)
	set the maximum iterations for this iterator
void	convergence_tolerance (Real conv_tol)
	set the method convergence tolerance (convergenceTol)
Real	convergence_tolerance () const
	return the method convergence tolerance (convergenceTol)
void	output_level (short out_lev)
	set the method output level (outputLevel)
short	output_level () const
	return the method output level (outputLevel)
void	summary_output (bool summary_output_flag)
	Set summary output control; true enables evaluation/results summary.
size_t	num_final_solutions () const
	return the number of solutions to retain in best variables/response arrays
void	num_final_solutions (size_t num_final)
	set the number of solutions to retain in best variables/response arrays
void	active_set (const ActiveSet &set)
	set the default active set (for use with iterators that employ evaluate_parameter_sets())
const ActiveSet &	active_set () const
	return the default active set (used by iterators that employ evaluate_parameter_sets())
void	active_set_request_vector (const ShortArray &asv)
	return the default active set request vector (used by iterators that employ evaluate_parameter_sets())
const ShortArray &	active_set_request_vector () const
	return the default active set request vector (used by iterators that employ evaluate_parameter_sets())
void	active_set_request_values (short asv_val)
	return the default active set request vector (used by iterators that employ evaluate_parameter_sets())
void	sub_iterator_flag (bool si_flag)
	set subIteratorFlag (and update summaryOutputFlag if needed)
bool	is_null () const
	function to check iteratorRep (does this envelope contain a letter?)
std::shared_ptr< Iterator >	iterator_rep () const
	returns iteratorRep for access to derived class member functions that are not mapped to the top Iterator level
virtual void	eval_tag_prefix (const String &eval_id_str)
	set the hierarchical eval ID tag prefix More...
std::shared_ptr< TraitsBase >	traits () const
	returns methodTraits for access to derived class member functions that are not mapped to the top TraitsBase level
bool	top_level ()
	Return whether the iterator is the top level iterator.
void	top_level (bool tflag)
	Set the iterator's top level flag.

Static Public Member Functions
static void	compute_moments (const RealVectorArray &fn_samples, SizetArray &sample_counts, RealMatrix &moment_stats, short moments_type, const StringArray &labels)
	core compute_moments() implementation with all data as inputs
static void	compute_moments (const RealVectorArray &fn_samples, RealMatrix &moment_stats, short moments_type)
	core compute_moments() implementation with all data as inputs
static void	compute_moments (const RealMatrix &fn_samples, RealMatrix &moment_stats, short moments_type)
	alternate RealMatrix samples API for use by external clients
static void	print_moments (std::ostream &s, const RealMatrix &moment_stats, const RealMatrix moment_cis, String qoi_type, short moments_type, const StringArray &moment_labels, bool print_cis)
	core print moments that can be called without object
static int	compute_wilks_sample_size (unsigned short order, Real alpha, Real beta, bool twosided=false)
	calculates the number of samples using the Wilks formula Static so I can test without instantiating a NonDSampling object - RWH
static Real	compute_wilks_residual (unsigned short order, int nsamples, Real alpha, Real beta, bool twosided)
	Helper function - calculates the Wilks residual.
static Real	compute_wilks_alpha (unsigned short order, int nsamples, Real beta, bool twosided=false)
	calculates the alpha paramter given number of samples using the Wilks formula Static so I can test without instantiating a NonDSampling object - RWH
static Real	compute_wilks_beta (unsigned short order, int nsamples, Real alpha, bool twosided=false)
	calculates the beta parameter given number of samples using the Wilks formula Static so I can test without instantiating a NonDSampling object - RWH
static Real	get_wilks_alpha_min ()
	Get the lower and upper bounds supported by Wilks bisection solves.
static Real	get_wilks_alpha_max ()
static Real	get_wilks_beta_min ()
static Real	get_wilks_beta_max ()

Protected Member Functions
	NonDSampling (ProblemDescDB &problem_db, Model &model)
	constructor More...
	NonDSampling (unsigned short method_name, Model &model, unsigned short sample_type, size_t samples, int seed, const String &rng, bool vary_pattern, short sampling_vars_mode)
	alternate constructor for sample generation and evaluation "on the fly" More...
	NonDSampling (unsigned short sample_type, size_t samples, int seed, const String &rng, const RealVector &lower_bnds, const RealVector &upper_bnds)
	alternate constructor for sample generation "on the fly" More...
	NonDSampling (unsigned short sample_type, size_t samples, int seed, const String &rng, const RealVector &means, const RealVector &std_devs, const RealVector &lower_bnds, const RealVector &upper_bnds, RealSymMatrix &correl)
	alternate constructor for sample generation of correlated normals "on the fly" More...
void	pre_run ()
	pre-run portion of run (optional); re-implemented by Iterators which can generate all Variables (parameter sets) a priori More...
void	core_run ()
size_t	num_samples () const
void	sampling_reset (size_t min_samples, bool all_data_flag, bool stats_flag)
	resets number of samples and sampling flags More...
void	sampling_reference (size_t samples_ref)
	set reference number of samples, which is a lower bound during reset
void	random_seed (int seed)
	assign randomSeed
void	vary_pattern (bool pattern_flag)
	set varyPattern
void	get_parameter_sets (Model &model)
	Uses samplerDriver to generate a set of samples from the distributions/bounds defined in the incoming model. More...
void	get_parameter_sets (Model &model, const size_t num_samples, RealMatrix &design_matrix)
	Uses samplerDriver to generate a set of samples from the distributions/bounds defined in the incoming model and populates the specified design matrix. More...
void	get_parameter_sets (Model &model, const size_t num_samples, RealMatrix &design_matrix, bool write_msg)
	core of get_parameter_sets that accepts message print control
void	get_parameter_sets (const RealVector &lower_bnds, const RealVector &upper_bnds)
	Uses samplerDriver to generate a set of uniform samples over lower_bnds/upper_bnds. More...
void	get_parameter_sets (const RealVector &means, const RealVector &std_devs, const RealVector &lower_bnds, const RealVector &upper_bnds, RealSymMatrix &correl)
	Uses samplerDriver to generate a set of normal samples. More...
void	update_model_from_sample (Model &model, const Real *sample_vars)
	Override default update of continuous vars only.
void	sample_to_variables (const Real *sample_vars, Variables &vars)
	override default mapping of continuous variables only
void	variables_to_sample (const Variables &vars, Real *sample_vars)
	override default mapping of continuous variables only
const RealSymMatrix &	response_error_estimates () const
	return error estimates associated with each of the finalStatistics
virtual bool	seed_updated ()
	detect whether the seed has been updated since the most recent sample set generation
virtual void	active_set_mapping ()
	in the case of sub-iteration, map from finalStatistics.active_set() requests to activeSet used in evaluate_parameter_sets() More...
void	initialize_sample_driver (bool write_message, size_t num_samples)
	increments numLHSRuns, sets random seed, and initializes samplerDriver
void	mode_counts (const Variables &vars, size_t &cv_start, size_t &num_cv, size_t &div_start, size_t &num_div, size_t &dsv_start, size_t &num_dsv, size_t &drv_start, size_t &num_drv) const
	compute sampled subsets (all, active, uncertain) within all variables (acv/adiv/adrv) from samplingVarsMode and model More...
void	mode_bits (const Variables &vars, BitArray &active_vars, BitArray &active_corr) const
	define subset views for sampling modes
Protected Member Functions inherited from NonD
	NonD (ProblemDescDB &problem_db, Model &model)
	constructor
	NonD (unsigned short method_name, Model &model)
	alternate constructor for sample generation and evaluation "on the fly"
	NonD (unsigned short method_name, Model &model, const ShortShortPair &approx_view)
	alternate constructor for sample generation and evaluation "on the fly"
	NonD (unsigned short method_name, const RealVector &lower_bnds, const RealVector &upper_bnds)
	alternate constructor for sample generation "on the fly"
	~NonD ()
	destructor
void	derived_set_communicators (ParLevLIter pl_iter)
	derived class contributions to setting the communicators associated with this Iterator instance
void	initialize_run ()
	utility function to perform common operations prior to pre_run(); typically memory initialization; setting of instance pointers More...
void	finalize_run ()
	utility function to perform common operations following post_run(); deallocation and resetting of instance pointers More...
const Response &	response_results () const
	return the final statistics from the nondeterministic iteration
void	response_results_active_set (const ActiveSet &set)
	set the active set within finalStatistics
virtual void	initialize_response_covariance ()
	initializes respCovariance
virtual void	initialize_final_statistics ()
	initializes finalStatistics for storing NonD final results More...
virtual bool	discrepancy_sample_counts () const
	flag identifying whether sample counts correspond to level discrepancies
void	pull_level_mappings (RealVector &level_maps, size_t offset)
	concatenate computed{Resp,Prob,Rel,GenRel}Levels into level_maps
void	push_level_mappings (const RealVector &level_maps, size_t offset)
	update computed{Resp,Prob,Rel,GenRel}Levels from level_maps
void	configure_1d_sequence (size_t &num_steps, size_t &secondary_index, short &seq_type)
	configure a one-dimensional hierarchical sequence (ML or MF) More...
void	configure_2d_sequence (size_t &num_steps, size_t &secondary_index, short &seq_type)
	configure a two-dimensional hierarchical sequence (MLMF) More...
void	configure_enumeration (size_t &num_combinations, short &seq_type)
	configure the total number of model form/resolution level options More...
short	configure_cost (size_t num_steps, short seq_type, RealVector &cost)
	extract cost estimates from model ensemble, enforcing requirements (case without metadata support)
short	configure_cost (size_t num_steps, short seq_type, RealVector &cost, SizetSizetPairArray &cost_md_indices)
	extract cost estimates from model ensemble, enforcing requirements (case with metadata support)
short	query_cost (size_t num_steps, short seq_type, RealVector &cost)
	optionally extract cost estimates from model ensemble, if available (case without metadata support)
short	query_cost (size_t num_steps, short seq_type, RealVector &cost, BitArray &model_cost_spec, const SizetSizetPairArray &cost_md_indices)
	optionally extract cost estimates from model ensemble, if available (case with metadata support)
void	test_cost (short seq_type, const BitArray &model_cost_spec, SizetSizetPairArray &cost_md_indices)
	check cost specification and metadata indices for each active model
bool	test_cost (bool cost_spec, SizetSizetPair &cost_md_indices, const String &model_id)
	check cost specification and metadata indices for a given model
bool	valid_cost (Real cost) const
	test cost for value > 0
bool	valid_costs (const RealVector &costs) const
	test costs for valid values > 0
void	load_pilot_sample (const SizetArray &pilot_spec, size_t num_steps, SizetArray &delta_N_l)
	distribute pilot sample specification across model forms or levels
void	load_pilot_sample (const SizetArray &pilot_spec, short seq_type, const Sizet3DArray &N_l, Sizet2DArray &delta_N_l)
	distribute pilot sample specification across model forms and levels
template<typename ArrayType >
void	inflate_approx_samples (const ArrayType &N_l, bool multilev, size_t secondary_index, std::vector< ArrayType > &N_l_vec)
	update the relevant slice of N_l_3D from the final 2D multilevel or 2D multifidelity sample profile
template<typename ArrayType >
void	inflate_sequence_samples (const ArrayType &N_l, bool multilev, size_t secondary_index, std::vector< ArrayType > &N_l_vec)
	update the relevant slice of N_l_3D from the final 2D multilevel or 2D multifidelity sample profile
void	resize_final_statistics_gradients ()
	resizes finalStatistics::functionGradients based on finalStatistics ASV
void	update_aleatory_final_statistics ()
	update finalStatistics::functionValues from momentStats and computed{Prob,Rel,GenRel,Resp}Levels
void	update_system_final_statistics ()
	update system metrics from component metrics within finalStatistics
void	update_system_final_statistics_gradients ()
	update finalStatistics::functionGradients
void	initialize_level_mappings ()
	size computed{Resp,Prob,Rel,GenRel}Levels
void	compute_densities (const RealRealPairArray &min_max_fns, bool prob_refinement=false, bool all_levels_computed=false)
	compute the PDF bins from the CDF/CCDF values and store in computedPDF{Abscissas,Ordinates} More...
void	print_densities (std::ostream &s) const
	output the PDFs reflected in computedPDF{Abscissas,Ordinates} using default qoi_type and pdf_labels
void	print_densities (std::ostream &s, String qoi_type, const StringArray &pdf_labels) const
	output the PDFs reflected in computedPDF{Abscissas,Ordinates}
void	print_system_mappings (std::ostream &s) const
	print system series/parallel mappings for response levels
void	print_multilevel_evaluation_summary (std::ostream &s, const SizetArray &N_m)
	print evaluation summary for multilevel sampling across 1D level profile
void	print_multilevel_evaluation_summary (std::ostream &s, const Sizet2DArray &N_m)
	print evaluation summary for multilevel sampling across 2D level+QoI profile
void	print_multilevel_discrepancy_summary (std::ostream &s, const SizetArray &N_m)
	print evaluation summary for multilevel sampling across 1D level profile for discrepancy across levels
void	print_multilevel_discrepancy_summary (std::ostream &s, const SizetArray &N_m, const SizetArray &N_mp1)
	print evaluation summary for multilevel sampling across 1D level profile for discrepancy across model forms
void	print_multilevel_discrepancy_summary (std::ostream &s, const Sizet2DArray &N_m)
	print evaluation summary for multilevel sampling across 2D level+QoI profile for discrepancy across levels
void	print_multilevel_discrepancy_summary (std::ostream &s, const Sizet2DArray &N_m, const Sizet2DArray &N_mp1)
	print evaluation summary for multilevel sampling across 2D level+QoI profile for discrepancy across model forms
template<typename ArrayType >
void	print_multilevel_model_summary (std::ostream &s, const std::vector< ArrayType > &N_samp, String type, short seq_type, bool discrep_flag)
	print evaluation summary for multilevel sampling across 2D model+level profile (allocations) or 3D model+level+QoI profile (actual)
void	construct_lhs (Iterator &u_space_sampler, Model &u_model, unsigned short sample_type, int num_samples, int seed, const String &rng, bool vary_pattern, short sampling_vars_mode=ACTIVE)
	assign a NonDLHSSampling instance within u_space_sampler
unsigned short	sub_optimizer_select (unsigned short requested_sub_method, unsigned short default_sub_method=SUBMETHOD_NPSOL)
	utility for vetting sub-method request against optimizers within the package configuration
size_t	one_sided_relax_round (Real diff, Real relax_factor=1.)
	compute a one-sided sample increment for multilevel methods to move current sampling level to a new target
size_t	one_sided_delta (Real current, Real target, Real relax_factor=1.)
	compute a one-sided sample increment for multilevel methods to move current sampling level to a new target
size_t	one_sided_delta (const SizetArray &current, const RealVector &targets, Real relax_factor=1., size_t power=1)
	compute a one-sided sample increment for multilevel methods to move current sampling level to a new target
size_t	one_sided_delta (const SizetArray &current, Real target, Real relax_factor=1., size_t power=1)
	compute a one-sided sample increment for multilevel methods to move current sampling level to a new target
void	one_sided_delta (const SizetArray &current, const RealVector &targets, SizetArray &delta_N, Real relax_factor=1.)
	compute a one-sided sample increment vector to move current sampling levels to new targets
void	one_sided_delta (const Sizet2DArray &current, const RealVector &targets, SizetArray &delta_N, Real relax_factor=1.)
	compute a one-sided sample increment vector to move current sampling levels to new targets
bool	differ (size_t N_alloc_ij, const SizetArray &N_actual_ij) const
	return true if fine-grained reporting differs from coarse-grained
bool	differ (const SizetArray &N_alloc_i, const Sizet2DArray &N_actual_i) const
	return true if fine-grained reporting differs from coarse-grained
bool	differ (const Sizet2DArray &N_alloc, const Sizet3DArray &N_actual) const
	return true if fine-grained reporting differs from coarse-grained
void	archive_allocate_mappings ()
	allocate results array storage for distribution mappings
void	archive_from_resp (size_t fn_index, size_t inc_id=0)
	archive the mappings from specified response levels for specified fn
void	archive_to_resp (size_t fn_index, size_t inc_id=0)
	archive the mappings to computed response levels for specified fn and (optional) increment id.
void	archive_allocate_pdf ()
	allocate results array storage for pdf histograms
void	archive_pdf (size_t fn_index, size_t inc_id=0)
	archive a single pdf histogram for specified function
void	archive_equiv_hf_evals (const Real equiv_hf_evals)
	archive the equivalent number of HF evals (used by ML/MF methods)
bool	zeros (const SizetArray &N_m) const
	return true if N_m is empty or only populated with zeros
bool	zeros (const Sizet2DArray &N_m) const
	return true if N_m is empty or only populated with zeros
bool	zeros (const SizetVector &N_m) const
	return true if N_m is empty or only populated with zeros
bool	homogeneous (const SizetArray &N_l) const
	return true if N_l has consistent values
Protected Member Functions inherited from Analyzer
	Analyzer ()
	default constructor
	Analyzer (ProblemDescDB &problem_db, Model &model)
	standard constructor
	Analyzer (unsigned short method_name, Model &model)
	alternate constructor for instantiations "on the fly" with a Model
	Analyzer (unsigned short method_name, Model &model, const ShortShortPair &view_override)
	alternate constructor for instantiations "on the fly" with a Model
	Analyzer (unsigned short method_name)
	alternate constructor for instantiations "on the fly" without a Model
	~Analyzer ()
	destructor
virtual void	update_model_from_variables (Model &model, const Variables &vars)
	update model's current variables with data from vars
void	update_from_model (const Model &model)
	set inherited data attributes based on extractions from incoming model
void	post_run (std::ostream &s)
	post-run portion of run (optional); verbose to print results; re-implemented by Iterators that can read all Variables/Responses and perform final analysis phase in a standalone way More...
void	pre_output ()
void	print_results (std::ostream &s, short results_state=FINAL_RESULTS)
	print the final iterator results More...
const Model &	algorithm_space_model () const
const Variables &	variables_results () const
	return a single final iterator solution (variables)
const VariablesArray &	variables_array_results ()
	return multiple final iterator solutions (variables). This should only be used if returns_multiple_points() returns true.
const ResponseArray &	response_array_results ()
	return multiple final iterator solutions (response). This should only be used if returns_multiple_points() returns true.
bool	compact_mode () const
	returns Analyzer::compactMode
bool	returns_multiple_points () const
	indicates if this iterator returns multiple final points. Default return is false. Override to return true if appropriate.
void	evaluate_parameter_sets (Model &model, bool log_resp_flag=true, bool log_best_flag=false)
	perform function evaluations to map parameter sets (allVariables) into response sets (allResponses) More...
void	evaluate_batch (Model &model, int batch_id, bool log_best_flag=false)
	perform function evaluations to map a keyed batch of parameter sets (allVariablesMap[key]) into a corresponding batch of response sets (allResponsesMap[key])
const IntIntResponse2DMap &	synchronize_batches (Model &model, bool log_best_flag=false)
	perform function evaluations to map a keyed batch of parameter sets (allVariablesMap[key]) into a corresponding batch of response sets (allResponsesMap[key])
void	clear_batches ()
	since synchronize returns the aggregation of all evaluated batches, we use a separate call to indicate when processing of this data is complete and bookkeeping can be cleared
void	get_vbd_parameter_sets (Model &model, size_t num_samples)
	generate replicate parameter sets for use in variance-based decomposition More...
virtual void	archive_model_variables (const Model &, size_t idx) const
	archive model evaluation points
virtual void	archive_model_response (const Response &, size_t idx) const
	archive model evaluation responses
void	read_variables_responses (int num_evals, size_t num_vars)
	convenience function for reading variables/responses (used in derived classes post_input) More...
void	samples_to_variables_array (const RealMatrix &sample_matrix, VariablesArray &vars_array)
	convert samples array to variables array; e.g., allSamples to allVariables
void	variables_array_to_samples (const VariablesArray &vars_array, RealMatrix &sample_matrix)
	convert variables array to samples array; e.g., allVariables to allSamples
Protected Member Functions inherited from Iterator
	Iterator (BaseConstructor, ProblemDescDB &problem_db, std::shared_ptr< TraitsBase > traits=std::shared_ptr< TraitsBase >(new TraitsBase()))
	constructor initializes the base class part of letter classes (BaseConstructor overloading avoids infinite recursion in the derived class constructors - Coplien, p. 139) More...
	Iterator (NoDBBaseConstructor, unsigned short method_name, Model &model, std::shared_ptr< TraitsBase > traits=std::shared_ptr< TraitsBase >(new TraitsBase()))
	alternate constructor for base iterator classes constructed on the fly More...
	Iterator (NoDBBaseConstructor, unsigned short method_name, std::shared_ptr< TraitsBase > traits=std::shared_ptr< TraitsBase >(new TraitsBase()))
	alternate constructor for base iterator classes constructed on the fly More...
	Iterator (NoDBBaseConstructor, Model &model, size_t max_iter, size_t max_eval, Real conv_tol, std::shared_ptr< TraitsBase > traits=std::shared_ptr< TraitsBase >(new TraitsBase()))
	alternate envelope constructor for instantiations without ProblemDescDB More...
virtual void	derived_init_communicators (ParLevLIter pl_iter)
	derived class contributions to initializing the communicators associated with this Iterator instance
virtual const VariablesArray &	initial_points () const
	gets the multiple initial points for this iterator. This will only be meaningful after a call to initial_points mutator.
StrStrSizet	run_identifier () const
	get the unique run identifier based on method name, id, and number of executions
void	initialize_model_graphics (Model &model, int iterator_server_id)
	helper function that encapsulates initialization operations, modular on incoming Model instance More...
void	export_final_surrogates (Model &data_fit_surr_model)
	export final surrogates generated, e.g., GP in EGO and friends More...

Protected Attributes
int	seedSpec
	the user seed specification (default is 0)
int	randomSeed
	the current seed
const int	samplesSpec
	initial specification of number of samples
size_t	samplesRef
	reference number of samples updated for refinement
size_t	numSamples
	the current number of samples to evaluate
String	rngName
	name of the random number generator
unsigned short	sampleType
	the sample type: default, random, lhs, incremental random, or incremental lhs
bool	wilksFlag
	flags use of Wilks formula to calculate num samples
unsigned short	wilksOrder
Real	wilksAlpha
Real	wilksBeta
short	wilksSidedness
RealMatrix	momentGrads
	gradients of standardized or central moments of response functions, as determined by finalMomentsType. Calculated in compute_moments() and indexed as (var,moment) when moment id runs from 1:2*numFunctions.
RealSymMatrix	finalStatErrors
	standard errors (estimator std deviation) for each of the finalStatistics
int	samplesIncrement
	current increment in a sequence of samples
std::unique_ptr< SamplerDriver >	samplerDriver
size_t	numLHSRuns
	counter for number of sample set generations
bool	stdRegressionCoeffs
	flags computation/output of standardized regression coefficients
bool	toleranceIntervalsFlag
	flags of double sided tolerance interval equivalent normal
Real	tiCoverage
	coverage to be used in the calculation of the double sided tolerance interval equivaluent normal
Real	tiConfidenceLevel
	confidence interval to be used in the calculation of the double sided tolerance interval equivalent normal
size_t	tiNumValidSamples
RealVector	tiDstienMus
Real	tiDeltaMultiplicativeFactor
RealVector	tiSampleSigmas
RealVector	tiDstienSigmas
bool	statsFlag
	flags computation/output of statistics
bool	allDataFlag
	flags update of allResponses (allVariables or allSamples already defined)
short	samplingVarsMode
	the sampling mode: ALEATORY_UNCERTAIN{,_UNIFORM}, EPISTEMIC_UNCERTAIN{,_UNIFORM}, UNCERTAIN{,_UNIFORM}, ACTIVE{,_UNIFORM}, or ALL{,_UNIFORM}. This is a secondary control on top of the variables view that allows sampling over subsets of variables that may differ from the view.
short	sampleRanksMode
	mode for input/output of LHS sample ranks: IGNORE_RANKS, GET_RANKS, SET_RANKS, or SET_GET_RANKS
bool	varyPattern
	flag for generating a sequence of seed values within multiple get_parameter_sets() calls so that these executions (e.g., for SBO/SBNLS) are not repeated, but are still repeatable
RealMatrix	sampleRanks
	data structure to hold the sample ranks
SensAnalysisGlobal	nonDSampCorr
	initialize statistical post processing
bool	backfillDuplicates
	flags whether to use backfill to enforce uniqueness of discrete LHS samples
RealRealPairArray	extremeValues
	Minimum and maximum values of response functions for epistemic calculations (calculated in compute_intervals()),.
bool	functionMomentsComputed
	Function moments have been computed; used to determine whether to archive the moments.
Protected Attributes inherited from NonD
NonD *	prevNondInstance
	pointer containing previous value of nondInstance
size_t	startCAUV
	starting index of continuous aleatory uncertain variables within active continuous variables (convenience for managing offsets)
size_t	numCAUV
	number of active continuous aleatory uncertain variables
bool	epistemicStats
	flag for computing interval-type metrics instead of integrated metrics If any epistemic vars are active in a metric evaluation, then flag is set.
RealMatrix	momentStats
	standardized or central resp moments, as determined by finalMomentsType. Calculated in compute_moments()) and indexed as (moment,fn).
RealVectorArray	requestedRespLevels
	requested response levels for all response functions
RealVectorArray	computedProbLevels
	output probability levels for all response functions resulting from requestedRespLevels
RealVectorArray	computedRelLevels
	output reliability levels for all response functions resulting from requestedRespLevels
RealVectorArray	computedGenRelLevels
	output generalized reliability levels for all response functions resulting from requestedRespLevels
short	respLevelTarget
	indicates mapping of z->p (PROBABILITIES), z->beta (RELIABILITIES), or z->beta* (GEN_RELIABILITIES)
short	respLevelTargetReduce
	indicates component or system series/parallel failure metrics
RealVectorArray	requestedProbLevels
	requested probability levels for all response functions
RealVectorArray	requestedRelLevels
	requested reliability levels for all response functions
RealVectorArray	requestedGenRelLevels
	requested generalized reliability levels for all response functions
RealVectorArray	computedRespLevels
	output response levels for all response functions resulting from requestedProbLevels, requestedRelLevels, or requestedGenRelLevels
size_t	totalLevelRequests
	total number of levels specified within requestedRespLevels, requestedProbLevels, and requestedRelLevels
bool	cdfFlag
	flag for type of probabilities/reliabilities used in mappings: cumulative/CDF (true) or complementary/CCDF (false)
bool	pdfOutput
	flag for managing output of response probability density functions (PDFs)
RealVectorArray	computedPDFAbscissas
	sorted response PDF intervals bounds extracted from min/max sample and requested/computedRespLevels (vector lengths = num bins + 1)
RealVectorArray	computedPDFOrdinates
	response PDF densities computed from bin counts divided by (unequal) bin widths (vector lengths = num bins)
Response	finalStatistics
	final statistics from the uncertainty propagation used in strategies: response means, standard deviations, and probabilities of failure
short	finalMomentsType
	type of moments logged within finalStatistics: none, central, standard
size_t	miPLIndex
	index for the active ParallelLevel within ParallelConfiguration::miPLIters
BitArray	pdfComputed
	Whether PDF was computed for function i; used to determine whether a pdf should be archived.
Protected Attributes inherited from Analyzer
size_t	numFunctions
	number of response functions
size_t	numContinuousVars
	number of active continuous vars
size_t	numDiscreteIntVars
	number of active discrete integer vars
size_t	numDiscreteStringVars
	number of active discrete string vars
size_t	numDiscreteRealVars
	number of active discrete real vars
bool	compactMode
	switch for allSamples (compact mode) instead of allVariables (normal mode)
VariablesArray	allVariables
	array of all variables to be evaluated in evaluate_parameter_sets()
RealMatrix	allSamples
	compact alternative to allVariables
IntResponseMap	allResponses
	array of all responses to be computed in evaluate_parameter_sets()
IntIntVariables2DMap	batchVariablesMap
	alternate container for Variables samples supporting evaluate_batch() and synchronize_batches(), a 2D map with outer batch_id and inner eval_id
IntIntRealVector2DMap	batchSamplesMap
	alternate container for RealVector samples supporting evaluate_batch() and synchronize_batches(), a 2D map with outer batch_id and inner eval_id
IntIntResponse2DMap	batchResponsesMap
	alternate container for Response samples supporting evaluate_batch() and synchronize_batches(), a 2D map with outer batch_id and inner eval_id
StringArray	allHeaders
	array of headers to insert into output while evaluating allVariables
size_t	numObjFns
	number of objective functions
size_t	numLSqTerms
	number of least squares terms
RealPairPRPMultiMap	bestVarsRespMap
	map which stores best set of solutions
bool	vbdFlag
	flag indicating the activation of variance-bsaed decomposition for computing Sobol' indices, via either PCE or sampling
Real	vbdDropTol
	tolerance for omitting output of small VBD indices computed via either PCE or sampling
Protected Attributes inherited from Iterator
ProblemDescDB &	probDescDB
	class member reference to the problem description database More...
ParallelLibrary &	parallelLib
	class member reference to the parallel library
ParConfigLIter	methodPCIter
	the active ParallelConfiguration used by this Iterator instance
Model	iteratedModel
	the model to be iterated (for iterators and meta-iterators employing a single model instance)
size_t	myModelLayers
	number of Models locally (in Iterator or derived classes) wrapped around the initially passed in Model
unsigned short	methodName
	name of the iterator (the user's method spec)
Real	convergenceTol
	iteration convergence tolerance
size_t	maxIterations
	maximum number of iterations for the method
size_t	maxFunctionEvals
	maximum number of fn evaluations for the method
int	maxEvalConcurrency
	maximum number of concurrent model evaluations More...
ActiveSet	activeSet
	the response data requirements on each function evaluation
size_t	numFinalSolutions
	number of solutions to retain in best variables/response arrays
VariablesArray	bestVariablesArray
	collection of N best solution variables found during the study; always in context of Model originally passed to the Iterator (any in-flight Recasts must be undone)
ResponseArray	bestResponseArray
	collection of N best solution responses found during the study; always in context of Model originally passed to the Iterator (any in-flight Recasts must be undone)
bool	subIteratorFlag
	flag indicating if this Iterator is a sub-iterator (NestedModel::subIterator or DataFitSurrModel::daceIterator)
short	outputLevel
	output verbosity level: {SILENT,QUIET,NORMAL,VERBOSE,DEBUG}_OUTPUT
bool	summaryOutputFlag
	flag for summary output (evaluation stats, final results); default true, but false for on-the-fly (helper) iterators and sub-iterator use cases
ResultsManager &	resultsDB
	reference to the global iterator results database
EvaluationStore &	evaluationsDB
	reference to the global evaluation database
EvaluationsDBState	evaluationsDBState
	State of evaluations DB for this iterator.
ResultsNames	resultsNames
	valid names for iterator results
std::shared_ptr< TraitsBase >	methodTraits
	pointer that retains shared ownership of a TraitsBase object, or child thereof
bool	topLevel
	Whether this is the top level iterator.
bool	exportSurrogate = false
	whether to export final surrogates
String	surrExportPrefix
	base filename for exported surrogates
unsigned short	surrExportFormat = NO_MODEL_FORMAT
	(bitwise) format(s) to export

Private Member Functions
void	sample_to_variables (const Real *sample_vars, Variables &vars, Model &model)
	helper function to consolidate update code
void	sample_to_type (const Real *sample_vars, Variables &vars, size_t &cv_index, size_t num_cv, size_t &div_index, size_t num_div, size_t &dsv_index, size_t num_dsv, size_t &drv_index, size_t num_drv, size_t &samp_index, Model &model)
	helper function to copy a range from sample_vars to a variables type
void	sample_to_cv_type (const Real *sample_vars, Variables &vars, size_t &cv_index, size_t num_cv, size_t &div_index, size_t num_div, size_t &dsv_index, size_t num_dsv, size_t &drv_index, size_t num_drv, size_t &samp_index)
	helper function to copy a range from sample_vars to a variables type
void	sample_to_cv (const Real *sample_vars, Variables &vars, size_t &acv_index, size_t num_acv, size_t &samp_index)
	helper function to copy a range from sample_vars to continuous variables
void	sample_to_div (const Real *sample_vars, Variables &vars, size_t &adiv_index, size_t num_adiv, size_t &samp_index)
	helper function to copy a range from sample_vars to discrete int variables
void	sample_to_dsv (const Real *sample_vars, Variables &vars, size_t &adsv_index, size_t num_adsv, size_t &samp_index, const StringSetArray &dss_values)
	helper function to copy a range from sample_vars to discrete string vars
void	sample_to_drv (const Real *sample_vars, Variables &vars, size_t &adrv_index, size_t num_adrv, size_t &samp_index)
	helper function to copy a range from sample_vars to discrete real vars

Private Attributes
RealMatrix	momentCIs
	Matrix of confidence internals on moments, with rows for mean_lower, mean_upper, sd_lower, sd_upper (calculated in compute_moments())

Additional Inherited Members
Static Protected Member Functions inherited from Iterator
static void	gnewton_set_recast (const Variables &recast_vars, const ActiveSet &recast_set, ActiveSet &sub_model_set)
	conversion of request vector values for the Gauss-Newton Hessian approximation More...
Static Protected Attributes inherited from NonD
static NonD *	nondInstance
	pointer to the active object instance used within static evaluator functions in order to avoid the need for static data

Detailed Description

Base class for common code between NonDLHSSampling, NonDAdaptImpSampling, and other specializations.

This base class provides common code for sampling methods which employ the Latin Hypercube Sampling (LHS) package from Sandia Albuquerque's Risk and Reliability organization. NonDSampling now exclusively utilizes the 1998 Fortran 90 LHS version as documented in SAND98-0210, which was converted to a UNIX link library in

1. The 1970's vintage LHS (that had been f2c'd and converted to incomplete classes) has been removed.

Constructor & Destructor Documentation

NonDSampling() [1/5]

NonDSampling	(	Model &	model,
		const RealMatrix &	sample_matrix
	)

alternate constructor for evaluating and computing statistics for the provided set of samples

This alternate constructor defines allSamples from an incoming sample matrix.

References Analyzer::allSamples, Analyzer::compactMode, Iterator::maxEvalConcurrency, NonDSampling::numSamples, NonDSampling::samplesRef, NonDSampling::samplesSpec, and Iterator::subIteratorFlag.

NonDSampling() [2/5]

NonDSampling ( ProblemDescDB &  problem_db, Model &  model  )

protected

constructor

This constructor is called for a standard letter-envelope iterator instantiation. In this case, set_db_list_nodes has been called and probDescDB can be queried for settings from the method specification.

References Dakota::abort_handler(), NonDSampling::compute_wilks_sample_size(), NonD::epistemicStats, ProblemDescDB::get_real(), ProblemDescDB::get_short(), ProblemDescDB::get_ushort(), Iterator::maxEvalConcurrency, Analyzer::numFunctions, NonDSampling::numSamples, Iterator::probDescDB, NonD::requestedProbLevels, NonDSampling::samplesRef, NonDSampling::sampleType, NonDSampling::stdRegressionCoeffs, NonDSampling::tiConfidenceLevel, NonDSampling::tiCoverage, NonDSampling::toleranceIntervalsFlag, NonD::totalLevelRequests, and NonDSampling::wilksFlag.

NonDSampling() [3/5]

NonDSampling ( unsigned short  method_name, Model &  model, unsigned short  sample_type, size_t  samples, int  seed, const String &  rng, bool  vary_pattern, short  sampling_vars_mode  )

protected

alternate constructor for sample generation and evaluation "on the fly"

This alternate constructor is used for generation and evaluation of on-the-fly sample sets.

References SharedVariablesData::active_components_totals(), Model::current_variables(), NonD::epistemicStats, Iterator::iteratedModel, Iterator::maxEvalConcurrency, NonDSampling::numSamples, NonDSampling::sampleType, NonDSampling::samplingVarsMode, Variables::shared_data(), and Iterator::subIteratorFlag.

NonDSampling() [4/5]

NonDSampling ( unsigned short  sample_type, size_t  samples, int  seed, const String &  rng, const RealVector &  lower_bnds, const RealVector &  upper_bnds  )

protected

alternate constructor for sample generation "on the fly"

This alternate constructor is used by ConcurrentStrategy for generation of uniform, uncorrelated sample sets.

References Iterator::maxEvalConcurrency, NonDSampling::numSamples, NonDSampling::sampleType, and Iterator::subIteratorFlag.

NonDSampling() [5/5]

NonDSampling ( unsigned short  sample_type, size_t  samples, int  seed, const String &  rng, const RealVector &  means, const RealVector &  std_devs, const RealVector &  lower_bnds, const RealVector &  upper_bnds, RealSymMatrix &  correl  )

protected

alternate constructor for sample generation of correlated normals "on the fly"

This alternate constructor is used by ConcurrentStrategy for generation of normal, correlated sample sets.

References Iterator::maxEvalConcurrency, NonDSampling::numSamples, NonDSampling::sampleType, and Iterator::subIteratorFlag.

Member Function Documentation

compute_level_mappings()

void compute_level_mappings

(

const IntResponseMap &

samples

)

called by compute_statistics() to calculate CDF/CCDF mappings of z to p/beta and of p/beta to z as well as PDFs

Computes CDF/CCDF based on sample binning. A PDF is inferred from a CDF/CCDF within compute_densities() after level computation.

References Dakota::abort_handler(), Response::active_set_derivative_vector(), Response::active_set_request_vector(), NonD::archive_allocate_mappings(), NonD::cdfFlag, NonD::compute_densities(), NonD::computedGenRelLevels, NonD::computedProbLevels, NonD::computedRelLevels, NonD::computedRespLevels, NonDSampling::extremeValues, NonD::finalMomentsType, NonD::finalStatistics, Response::function_gradient_view(), NonD::initialize_level_mappings(), Iterator::iteratedModel, NonDSampling::momentGrads, NonD::momentStats, Analyzer::numFunctions, NonD::pdfOutput, NonD::requestedGenRelLevels, NonD::requestedProbLevels, NonD::requestedRelLevels, NonD::requestedRespLevels, NonD::respLevelTarget, and Model::response_labels().

Referenced by NonDSampling::compute_statistics().

transform_samples()

void transform_samples ( Pecos::ProbabilityTransformation &  nataf, bool  x_to_u = true  )

inline

alternate version to transform allSamples. This is needed since random variable distribution parameters are not updated until run time and an imported sample_matrix is typically in x-space.

transform x_samples to u_samples for use by expansionSampler

References Analyzer::allSamples, Model::continuous_variable_ids(), Iterator::iteratedModel, and NonDSampling::transform_samples().

pre_run()

void pre_run ( )

inlineprotectedvirtual

pre-run portion of run (optional); re-implemented by Iterators which can generate all Variables (parameter sets) a priori

pre-run phase, which a derived iterator may optionally reimplement; when not present, pre-run is likely integrated into the derived run function. This is a virtual function; when re-implementing, a derived class must call its nearest parent's pre_run(), if implemented, typically before performing its own implementation steps.

Reimplemented from Analyzer.

References NonDSampling::active_set_mapping(), Analyzer::pre_run(), and Iterator::subIteratorFlag.

Referenced by NonDEnsembleSampling::pre_run(), and NonDLHSSampling::pre_run().

core_run()

void core_run ( )

protectedvirtual

Default implementation generates allResponses from either allSamples or allVariables.

Reimplemented from Iterator.

References NonDSampling::allDataFlag, Analyzer::evaluate_parameter_sets(), Iterator::iteratedModel, and NonDSampling::statsFlag.

num_samples()

size_t num_samples ( ) const

inlineprotectedvirtual

Return current number of evaluation points. Since the calculation of samples, collocation points, etc. might be costly, provide a default implementation here that backs out from the maxEvalConcurrency.

Reimplemented from Analyzer.

References NonDSampling::numSamples.

Referenced by NonDLHSSampling::archive_results(), NonDAdaptiveSampling::construct_fsu_sampler(), NonDAdaptImpSampling::evaluate_samples(), NonDSampling::get_parameter_sets(), NonDSampling::initialize_sample_driver(), NonDLHSSampling::print_header_and_statistics(), NonDSampling::print_wilks_stastics(), NonDAdaptImpSampling::select_rep_points(), NonDLHSSampling::store_ranks(), and NonDSampling::transform_samples().

sampling_reset()

void sampling_reset ( size_t  min_samples, bool  all_data_flag, bool  stats_flag  )

inlineprotectedvirtual

resets number of samples and sampling flags

used by DataFitSurrModel::build_global() to publish the minimum number of samples needed from the sampling routine (to build a particular global approximation) and to set allDataFlag and statsFlag. In this case, allDataFlag is set to true (vectors of variable and response sets must be returned to build the global approximation) and statsFlag is set to false (statistics computations are not needed).

Reimplemented from Iterator.

References NonDSampling::allDataFlag, NonDSampling::numSamples, NonDSampling::samplesIncrement, NonDSampling::samplesRef, and NonDSampling::statsFlag.

get_parameter_sets() [1/4]

void get_parameter_sets ( Model &  model )

inlineprotectedvirtual

Uses samplerDriver to generate a set of samples from the distributions/bounds defined in the incoming model.

This version of get_parameter_sets() extracts data from the user-defined model in any of the four sampling modes and populates class member allSamples.

Reimplemented from Analyzer.

References Analyzer::allSamples, and NonDSampling::numSamples.

Referenced by NonDLHSSampling::compute_pca(), NonDAdaptImpSampling::core_run(), NonDLHSSampling::d_optimal_parameter_set(), NonDHierarchSampling::ensemble_sample_batch(), NonDSampling::get_parameter_sets(), NonDLHSSampling::increm_lhs_parameter_set(), NonDLHSSampling::initial_increm_lhs_set(), NonDLHSSampling::NonDLHSSampling(), and NonDLHSSampling::pre_run().

get_parameter_sets() [2/4]

void get_parameter_sets ( Model &  model, const size_t  num_samples, RealMatrix &  design_matrix  )

inlineprotectedvirtual

Uses samplerDriver to generate a set of samples from the distributions/bounds defined in the incoming model and populates the specified design matrix.

This version of get_parameter_sets() extracts data from the user-defined model in any of the four sampling modes and populates the specified design matrix.

Reimplemented from Analyzer.

References NonDSampling::get_parameter_sets(), and NonDSampling::num_samples().

get_parameter_sets() [3/4]

void get_parameter_sets ( const RealVector &  lower_bnds, const RealVector &  upper_bnds  )

protected

Uses samplerDriver to generate a set of uniform samples over lower_bnds/upper_bnds.

This version of get_parameter_sets() does not extract data from the user-defined model, but instead relies on the incoming bounded region definition. It only support a UNIFORM sampling mode, where the distinction of ACTIVE_UNIFORM vs. ALL_UNIFORM is handled elsewhere.

References Analyzer::allSamples, NonDSampling::initialize_sample_driver(), and NonDSampling::numSamples.

get_parameter_sets() [4/4]

void get_parameter_sets ( const RealVector &  means, const RealVector &  std_devs, const RealVector &  lower_bnds, const RealVector &  upper_bnds, RealSymMatrix &  correl  )

protected

Uses samplerDriver to generate a set of normal samples.

This version of get_parameter_sets() does not extract data from the user-defined model, but instead relies on the incoming definition. It only supports the sampling of normal variables.

References Analyzer::allSamples, NonDSampling::initialize_sample_driver(), and NonDSampling::numSamples.

active_set_mapping()

void active_set_mapping ( )

protectedvirtual

in the case of sub-iteration, map from finalStatistics.active_set() requests to activeSet used in evaluate_parameter_sets()

Map ASV/DVV requests in final statistics into activeSet for use in evaluate_parameter_sets()

Reimplemented in NonDEnsembleSampling.

References Response::active_set_derivative_vector(), Response::active_set_request_vector(), Iterator::activeSet, ActiveSet::derivative_vector(), NonD::finalMomentsType, NonD::finalStatistics, Analyzer::numFunctions, ActiveSet::request_vector(), NonD::requestedGenRelLevels, NonD::requestedProbLevels, NonD::requestedRelLevels, NonD::requestedRespLevels, NonD::respLevelTarget, and NonD::totalLevelRequests.

Referenced by NonDEnsembleSampling::active_set_mapping(), and NonDSampling::pre_run().

mode_counts()

void mode_counts ( const Variables &  vars, size_t &  cv_start, size_t &  num_cv, size_t &  div_start, size_t &  num_div, size_t &  dsv_start, size_t &  num_dsv, size_t &  drv_start, size_t &  num_drv  ) const

protected

compute sampled subsets (all, active, uncertain) within all variables (acv/adiv/adrv) from samplingVarsMode and model

This function and its helpers to follow are needed since NonDSampling supports a richer set of sampling modes than just the active variable subset. mode_counts() manages the samplingVarsMode setting, while its helper functions (view_{design,aleatory_uncertain,epistemic_uncertain, uncertain,state}_counts) manage the active variables view. Similar to the computation of starts and counts in creating active variable views, the results of this function are starts and counts for use within model.all_*() set/get functions.

References Variables::acv(), Variables::adiv(), Variables::adrv(), Variables::adsv(), SharedVariablesData::aleatory_uncertain_counts(), Variables::cv(), Variables::cv_start(), SharedVariablesData::design_counts(), Variables::div(), Variables::div_start(), Variables::drv(), Variables::drv_start(), Variables::dsv(), Variables::dsv_start(), SharedVariablesData::epistemic_uncertain_counts(), NonDSampling::samplingVarsMode, Variables::shared_data(), SharedVariablesData::state_counts(), and SharedVariablesData::uncertain_counts().

Referenced by NonDSampling::compute_statistics(), NonDLHSSampling::d_optimal_parameter_set(), NonDSampling::get_parameter_sets(), NonDLHSSampling::post_input(), NonDLHSSampling::pre_run(), and NonDSampling::variables_to_sample().

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The documentation for this class was generated from the following files:

• NonDSampling.hpp
• NonDSampling.cpp