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Dakota
Version 6.21
Explore and Predict with Confidence
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Dakota
Version 6.21
Explore and Predict with Confidence
|
This is the complete list of members for NonDDREAMBayesCalibration, including all inherited members.
| acceptanceChain | NonDBayesCalibration | protected |
| acceptedFnVals | NonDBayesCalibration | protected |
| accepts_multiple_points() const | Iterator | virtual |
| active_set(const ActiveSet &set) | Iterator | inline |
| active_set() const | Iterator | inline |
| active_set_request_values(short asv_val) | Iterator | inline |
| active_set_request_vector(const ShortArray &asv) | Iterator | inline |
| active_set_request_vector() const | Iterator | inline |
| activeSet | Iterator | protected |
| adaptExpDesign | NonDBayesCalibration | protected |
| adaptPosteriorRefine | NonDBayesCalibration | protected |
| add_lhs_hifi_data() | NonDBayesCalibration | protected |
| algorithm_space_model() const | NonDBayesCalibration | inlineprotectedvirtual |
| all_responses() const | Analyzer | inlinevirtual |
| all_samples() | Analyzer | inlinevirtual |
| all_variables() | Analyzer | inlinevirtual |
| allHeaders | Analyzer | protected |
| allResponses | Analyzer | protected |
| allSamples | Analyzer | protected |
| allVariables | Analyzer | protected |
| Analyzer() | Analyzer | inlineprotected |
| Analyzer(ProblemDescDB &problem_db, Model &model) | Analyzer | protected |
| Analyzer(unsigned short method_name, Model &model) | Analyzer | protected |
| Analyzer(unsigned short method_name, Model &model, const ShortShortPair &view_override) | Analyzer | protected |
| Analyzer(unsigned short method_name) | Analyzer | protected |
| ann_dist(const ANNpointArray matrix1, const ANNpointArray matrix2, RealVector &distances, int NX, int NY, int dim2, IntVector &k, double eps) (defined in NonDBayesCalibration) | NonDBayesCalibration | protectedstatic |
| ann_dist(const ANNpointArray matrix1, const ANNpointArray matrix2, RealVector &distances, Int2DArray &indices, int NX, int NY, int dim2, IntVector &k, double eps) (defined in NonDBayesCalibration) | NonDBayesCalibration | protectedstatic |
| apply_error_vec(const RealVector &error_vec, int &seed, int experiment) (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
| apply_hifi_sim_error(int &random_seed, int num_exp, int exp_offset=0) | NonDBayesCalibration | protected |
| archive_acceptance_chain() | NonDDREAMBayesCalibration | protected |
| archive_allocate_mappings() | NonD | protected |
| archive_allocate_pdf() | NonD | protected |
| archive_equiv_hf_evals(const Real equiv_hf_evals) | NonD | protected |
| archive_from_resp(size_t fn_index, size_t inc_id=0) | NonD | protected |
| archive_model_response(const Response &, size_t idx) const | Analyzer | inlineprotectedvirtual |
| archive_model_variables(const Model &, size_t idx) const | Analyzer | inlineprotectedvirtual |
| archive_pdf(size_t fn_index, size_t inc_id=0) | NonD | protected |
| archive_to_resp(size_t fn_index, size_t inc_id=0) | NonD | protected |
| assess_emulator_convergence() | NonDBayesCalibration | protected |
| assign_rep(std::shared_ptr< Iterator > iterator_rep) | Iterator | |
| augment_gradient_with_log_prior(VectorType1 &log_grad, const VectorType2 &vec) | NonDBayesCalibration | protected |
| augment_hessian_with_log_prior(MatrixType &log_hess, const VectorType &vec) | NonDBayesCalibration | protected |
| batchEvals | NonDBayesCalibration | protected |
| batchResponsesMap | Analyzer | protected |
| batchSamplesMap | Analyzer | protected |
| batchSize | NonDBayesCalibration | protected |
| batchVariablesMap | Analyzer | protected |
| best_to_all() | NonDBayesCalibration | protected |
| bestResponseArray | Iterator | protected |
| bestSamples | NonDBayesCalibration | protected |
| bestVariablesArray | Iterator | protected |
| bestVarsRespMap | Analyzer | protected |
| build_designs(VariablesArray &design_matrix) | NonDBayesCalibration | protected |
| build_error_matrix(const RealVector &sim_error_vec, RealMatrix &sim_error_matrix, int &seed) | NonDBayesCalibration | protected |
| build_field_discrepancy() (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
| build_GP_field(const RealMatrix &t, RealMatrix &t_pred, const RealVector &concat_disc, RealVector &disc_pred, RealVector &disc_var) (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
| build_hi2lo_xmatrix(RealMatrix &Xmatrix, int i, const RealMatrix &mi_chain, RealMatrix &sim_error_matrix) | NonDBayesCalibration | protected |
| build_model_discrepancy() | NonDBayesCalibration | protected |
| build_scalar_discrepancy() (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
| burnInSamples | NonDBayesCalibration | protected |
| cache_chain(const double *const z) | NonDDREAMBayesCalibration | protectedstatic |
| calculate_evidence() | NonDBayesCalibration | protected |
| calculate_kde() | NonDBayesCalibration | protected |
| calibrate() | NonDDREAMBayesCalibration | protectedvirtual |
| calibrate_to_hifi() | NonDBayesCalibration | protected |
| calibrate_with_adaptive_emulator() | NonDBayesCalibration | protected |
| calibrationData | NonDCalibration | protected |
| callback_linear_ineq_coefficients() const | Iterator | virtual |
| callback_linear_ineq_lower_bounds() const | Iterator | virtual |
| callback_linear_ineq_upper_bounds() const | Iterator | virtual |
| calModelDiscrepancy | NonDBayesCalibration | protected |
| calModelEvidence | NonDBayesCalibration | protected |
| calModelEvidLaplace | NonDBayesCalibration | protected |
| calModelEvidMC | NonDBayesCalibration | protected |
| cdfFlag | NonD | protected |
| chainDiagnostics | NonDBayesCalibration | protected |
| chainDiagnosticsCI | NonDBayesCalibration | protected |
| chainSamples | NonDBayesCalibration | protected |
| chainStats (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
| check_sub_iterator_conflict() | Iterator | virtual |
| choose_batch_from_mutual_info(int random_seed, int num_it, int max_hifi, int num_hifi, RealMatrix &mi_chain, VariablesArray &design_matrix, VariablesArray &optimal_config_matrix, RealVector &MI_vec) | NonDBayesCalibration | protected |
| clear_batches() | Analyzer | inlineprotected |
| compact_mode() const | Analyzer | inlineprotectedvirtual |
| compactMode | Analyzer | protected |
| compute_best_metrics(const Response &response, std::pair< Real, Real > &metrics) | Analyzer | private |
| compute_densities(const RealRealPairArray &min_max_fns, bool prob_refinement=false, bool all_levels_computed=false) | NonD | protected |
| compute_intervals() (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
| compute_prediction_vals(RealMatrix &filtered_fn_vals, RealMatrix &PredVals, int num_filtered, size_t num_exp, size_t num_concatenated) (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
| compute_statistics() | NonDBayesCalibration | protectedvirtual |
| computedGenRelLevels | NonD | protected |
| computedPDFAbscissas | NonD | protected |
| computedPDFOrdinates | NonD | protected |
| computedProbLevels | NonD | protected |
| computedRelLevels | NonD | protected |
| computedRespLevels | NonD | protected |
| configLowerBnds | NonDBayesCalibration | protected |
| configUpperBnds | NonDBayesCalibration | protected |
| configure_1d_sequence(size_t &num_steps, size_t &secondary_index, short &seq_type) | NonD | protected |
| configure_2d_sequence(size_t &num_steps, size_t &secondary_index, short &seq_type) | NonD | protected |
| configure_cost(size_t num_steps, short seq_type, RealVector &cost) | NonD | inlineprotected |
| configure_cost(size_t num_steps, short seq_type, RealVector &cost, SizetSizetPairArray &cost_md_indices) | NonD | inlineprotected |
| configure_enumeration(size_t &num_combinations, short &seq_type) | NonD | protected |
| construct_lhs(Iterator &u_space_sampler, Model &u_model, unsigned short sample_type, int num_samples, int seed, const String &rng, bool vary_pattern, short sampling_vars_mode=ACTIVE) | NonD | protected |
| construct_map_model() | NonDBayesCalibration | protected |
| construct_map_optimizer() | NonDBayesCalibration | protected |
| construct_mcmc_model() | NonDBayesCalibration | protected |
| convergence_tolerance(Real conv_tol) | Iterator | inline |
| convergence_tolerance() const | Iterator | inline |
| convergenceTol | Iterator | protected |
| core_run() | NonDBayesCalibration | protectedvirtual |
| correctedFieldResponses | NonDBayesCalibration | protected |
| correctedFieldVariances | NonDBayesCalibration | protected |
| correctedResponses | NonDBayesCalibration | protected |
| correctedVariances | NonDBayesCalibration | protected |
| crossoverChainPairs | NonDDREAMBayesCalibration | protected |
| declare_sources() | Iterator | virtual |
| derived_free_communicators(ParLevLIter pl_iter) | NonDBayesCalibration | protectedvirtual |
| derived_init_communicators(ParLevLIter pl_iter) | NonDBayesCalibration | protectedvirtual |
| derived_set_communicators(ParLevLIter pl_iter) | NonDBayesCalibration | protectedvirtual |
| differ(size_t N_alloc_ij, const SizetArray &N_actual_ij) const | NonD | inlineprotected |
| differ(const SizetArray &N_alloc_i, const Sizet2DArray &N_actual_i) const | NonD | inlineprotected |
| differ(const Sizet2DArray &N_alloc, const Sizet3DArray &N_actual) const | NonD | inlineprotected |
| discrepancy_sample_counts() const | NonD | inlineprotectedvirtual |
| discrepancyFieldResponses | NonDBayesCalibration | protected |
| discrepancyResponses | NonDBayesCalibration | protected |
| discrepancyType | NonDBayesCalibration | protected |
| discrepPolyOrder | NonDBayesCalibration | protected |
| distribute_levels(RealVectorArray &levels, bool ascending=true) | NonD | private |
| emulatorType | NonDBayesCalibration | protected |
| epistemicStats | NonD | protected |
| estimate_partition_bounds() | Iterator | virtual |
| eval_hi2lo_stop(bool &stop_metric, double &prev_MI, const RealVector &MI_vec, int num_hifi, int max_hifi, int num_candidates) | NonDBayesCalibration | protected |
| eval_tag_prefix(const String &eval_id_str) | Iterator | virtual |
| evaluate_batch(Model &model, int batch_id, bool log_best_flag=false) | Analyzer | protected |
| evaluate_parameter_sets(Model &model, bool log_resp_flag=true, bool log_best_flag=false) | Analyzer | protected |
| evaluationsDB | Iterator | protected |
| evaluationsDBState | Iterator | protected |
| evidenceSamples | NonDBayesCalibration | protected |
| execNum | Iterator | private |
| expData | NonDCalibration | protected |
| export_chain() | NonDBayesCalibration | protected |
| export_chain(RealMatrix &filtered_chain, RealMatrix &filtered_fn_vals) | NonDBayesCalibration | protected |
| export_discrepancy(RealMatrix &pred_config_mat) | NonDBayesCalibration | protected |
| export_field_discrepancy(RealMatrix &pred_vars_mat) | NonDBayesCalibration | protected |
| export_final_surrogates(Model &data_fit_surr_model) | Iterator | protected |
| export_posterior_samples_to_file(const std::string filename, const RealMatrix &posterior_data) const (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
| exportCorrModelFile | NonDBayesCalibration | protected |
| exportCorrModelFormat | NonDBayesCalibration | protected |
| exportCorrVarFile | NonDBayesCalibration | protected |
| exportCorrVarFormat | NonDBayesCalibration | protected |
| exportDiscrepFile | NonDBayesCalibration | protected |
| exportDiscrepFormat | NonDBayesCalibration | protected |
| exportMCMCFilename | NonDBayesCalibration | protected |
| exportMCMCFormat | NonDBayesCalibration | protected |
| exportSurrogate | Iterator | protected |
| extract_selected_posterior_samples(const std::vector< int > &points_to_keep, const RealMatrix &samples_for_posterior_eval, const RealVector &posterior_density, RealMatrix &posterior_data) const (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
| filter_chain(const RealMatrix &acceptance_chain, RealMatrix &filtered_chain, int target_length) | NonDBayesCalibration | protected |
| filter_chain(const RealMatrix &acceptance_chain, RealMatrix &filtered_chain) | NonDBayesCalibration | protected |
| filter_chain_by_conditioning() | NonDBayesCalibration | inlineprotectedvirtual |
| filter_fnvals(const RealMatrix &accepted_fn_vals, RealMatrix &filtered_fn_vals) (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
| filter_matrix_cols(const RealMatrix &orig_matrix, int start_index, int stride, RealMatrix &filtered_matrix) | NonDBayesCalibration | protected |
| filteredFnVals | NonDBayesCalibration | protected |
| filteredMCMCFormat (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
| final_moments_type() const | NonD | inline |
| final_moments_type(short type) | NonD | inline |
| finalize_run() | NonD | inlineprotectedvirtual |
| finalMomentsType | NonD | protected |
| finalStatistics | NonD | protected |
| fnStats (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
| free_communicators(ParLevLIter pl_iter) | Iterator | |
| get_iterator(ProblemDescDB &problem_db) | Iterator | private |
| get_iterator(ProblemDescDB &problem_db, Model &model) | Iterator | private |
| get_iterator(const String &method_string, Model &model) | Iterator | private |
| get_parameter_sets(Model &model) | Analyzer | protectedvirtual |
| get_parameter_sets(Model &model, const size_t num_samples, RealMatrix &design_matrix) | Analyzer | protectedvirtual |
| get_positive_definite_covariance_from_hessian(const RealSymMatrix &hessian, const RealMatrix &prior_chol_fact, RealSymMatrix &covariance, short output_lev) | NonDBayesCalibration | static |
| get_positive_definite_covariance_from_hessian(const RealSymMatrix &hessian, RealSymMatrix &covariance) | NonDBayesCalibration | inlineprotected |
| get_vbd_parameter_sets(Model &model, size_t num_samples) | Analyzer | protected |
| gnewton_set_recast(const Variables &recast_vars, const ActiveSet &recast_set, ActiveSet &sub_model_set) | Iterator | protectedstatic |
| grThreshold | NonDDREAMBayesCalibration | protected |
| hifiModel | NonDBayesCalibration | protected |
| hifiSampler | NonDBayesCalibration | protected |
| homogeneous(const SizetArray &N_l) const | NonD | inlineprotected |
| importCandFormat | NonDBayesCalibration | protected |
| importCandPtsFile | NonDBayesCalibration | protected |
| importPredConfigFormat | NonDBayesCalibration | protected |
| importPredConfigs | NonDBayesCalibration | protected |
| inflate_approx_samples(const ArrayType &N_l, bool multilev, size_t secondary_index, std::vector< ArrayType > &N_l_vec) | NonD | protected |
| inflate_sequence_samples(const ArrayType &N_l, bool multilev, size_t secondary_index, std::vector< ArrayType > &N_l_vec) | NonD | protected |
| init_bayesian_solver() (defined in NonDBayesCalibration) | NonDBayesCalibration | inlineprotectedvirtual |
| init_communicators(ParLevLIter pl_iter) | Iterator | |
| init_hyper_parameters() | NonDBayesCalibration | protected |
| init_map_optimizer() | NonDBayesCalibration | protected |
| initHifiSamples | NonDBayesCalibration | protected |
| initial_point(const Variables &pt) | Iterator | virtual |
| initial_point(const RealVector &pt) | Iterator | virtual |
| initial_points(const VariablesArray &pts) | Iterator | virtual |
| initial_points() const | Iterator | protectedvirtual |
| initialize_counts() | NonD | private |
| initialize_final_statistics() | NonD | protectedvirtual |
| initialize_graphics(int iterator_server_id=1) | Iterator | virtual |
| initialize_iterator(int job_index) | Iterator | virtual |
| initialize_level_mappings() | NonD | protected |
| initialize_model() | NonDBayesCalibration | protected |
| initialize_model_graphics(Model &model, int iterator_server_id) | Iterator | protected |
| initialize_response_covariance() | NonD | protectedvirtual |
| initialize_run() | NonD | inlineprotectedvirtual |
| invGammaAlphas | NonDBayesCalibration | protected |
| invGammaBetas | NonDBayesCalibration | protected |
| invGammaDists | NonDBayesCalibration | protected |
| is_null() const | Iterator | inline |
| iterated_model(const Model &model) | Iterator | inline |
| iterated_model() | Iterator | inline |
| iteratedModel | Iterator | protected |
| Iterator(std::shared_ptr< TraitsBase > traits=std::shared_ptr< TraitsBase >(new TraitsBase())) | Iterator | |
| Iterator(ProblemDescDB &problem_db, std::shared_ptr< TraitsBase > traits=std::shared_ptr< TraitsBase >(new TraitsBase())) | Iterator | |
| Iterator(ProblemDescDB &problem_db, Model &model, std::shared_ptr< TraitsBase > traits=std::shared_ptr< TraitsBase >(new TraitsBase())) | Iterator | |
| Iterator(const String &method_string, Model &model, std::shared_ptr< TraitsBase > traits=std::shared_ptr< TraitsBase >(new TraitsBase())) | Iterator | |
| Iterator(const Iterator &iterator) | Iterator | |
| Iterator(BaseConstructor, ProblemDescDB &problem_db, std::shared_ptr< TraitsBase > traits=std::shared_ptr< TraitsBase >(new TraitsBase())) | Iterator | protected |
| Iterator(NoDBBaseConstructor, unsigned short method_name, Model &model, std::shared_ptr< TraitsBase > traits=std::shared_ptr< TraitsBase >(new TraitsBase())) | Iterator | protected |
| Iterator(NoDBBaseConstructor, unsigned short method_name, std::shared_ptr< TraitsBase > traits=std::shared_ptr< TraitsBase >(new TraitsBase())) | Iterator | protected |
| Iterator(NoDBBaseConstructor, Model &model, size_t max_iter, size_t max_eval, Real conv_tol, std::shared_ptr< TraitsBase > traits=std::shared_ptr< TraitsBase >(new TraitsBase())) | Iterator | protected |
| iterator_rep() const | Iterator | inline |
| iteratorRep | Iterator | private |
| jumpStep | NonDDREAMBayesCalibration | protected |
| kl_est (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
| kl_post_prior(RealMatrix &acceptanceChain) | NonDBayesCalibration | protected |
| knn_kl_div(RealMatrix &distX_samples, RealMatrix &distY_samples, size_t dim) (defined in NonDBayesCalibration) | NonDBayesCalibration | static |
| knn_mutual_info(RealMatrix &Xmatrix, int dimX, int dimY, unsigned short alg) (defined in NonDBayesCalibration) | NonDBayesCalibration | static |
| level_mappings_file(size_t fn_index, const String &qoi_label) const | NonD | private |
| load_pilot_sample(const SizetArray &pilot_spec, size_t num_steps, SizetArray &delta_N_l) | NonD | protected |
| load_pilot_sample(const SizetArray &pilot_spec, short seq_type, const Sizet3DArray &N_l, Sizet2DArray &delta_N_l) | NonD | protected |
| log_likelihood(const RealVector &residuals, const RealVector &hyper_params) | NonDBayesCalibration | protected |
| log_prior_density(const VectorType &vec) | NonDBayesCalibration | |
| log_prior_density(const RealVector &vec) (defined in NonDBayesCalibration) | NonDBayesCalibration | inline |
| log_response(const Model &model, IntResponseMap &resp_map, size_t i, bool log_resp_flag, bool log_best_flag) | Analyzer | inlineprivate |
| log_response_map(const RealMatrix &samples, const IntResponseMap &resp_map, bool log_best_flag) | Analyzer | inlineprivate |
| log_response_map(const VariablesArray &vars_array, const IntResponseMap &resp_map, bool log_best_flag) | Analyzer | inlineprivate |
| log_response_map(const IntRealVectorMap &rv_map, const IntResponseMap &resp_map, bool log_best_flag) | Analyzer | inlineprivate |
| log_response_map(const IntVariablesMap &vars_map, const IntResponseMap &resp_map, bool log_best_flag) | Analyzer | inlineprivate |
| map_pre_solve() | NonDBayesCalibration | protectedvirtual |
| mapOptAlgOverride | NonDBayesCalibration | protected |
| mapOptimizer | NonDBayesCalibration | protected |
| mapSoln | NonDBayesCalibration | protected |
| maxEvalConcurrency | Iterator | protected |
| maxFunctionEvals | Iterator | protected |
| maxHifiEvals | NonDBayesCalibration | protected |
| maximum_evaluation_concurrency() const | Iterator | inline |
| maximum_evaluation_concurrency(int max_conc) | Iterator | inline |
| maximum_iterations() const | Iterator | inline |
| maximum_iterations(size_t max_iter) | Iterator | inline |
| maxIterations | Iterator | protected |
| mcmcDerivOrder | NonDBayesCalibration | protected |
| mcmcModel | NonDBayesCalibration | protected |
| mcmcModelHasSurrogate | NonDBayesCalibration | protected |
| method_enum_to_string(unsigned short method_enum) const | Iterator | |
| method_id() const | Iterator | inline |
| method_name(unsigned short m_name) | Iterator | inline |
| method_name() const | Iterator | inline |
| method_recourse(unsigned short method_name) | Iterator | virtual |
| method_string(const String &m_str) | Iterator | inline |
| method_string() const | Iterator | inline |
| method_string_to_enum(const String &method_str) const | Iterator | |
| methodId | Iterator | private |
| methodName | Iterator | protected |
| methodPCIter | Iterator | protected |
| methodPCIterMap | Iterator | private |
| methodTraits | Iterator | protected |
| miPLIndex | NonD | protected |
| momentStats | NonD | protected |
| mutual_info_buildX() (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
| mutualInfoAlg | NonDBayesCalibration | protected |
| myModelLayers | Iterator | protected |
| neg_log_post_resp_mapping(const Variables &model_vars, const Variables &nlpost_vars, const Response &model_resp, Response &nlpost_resp) | NonDBayesCalibration | protectedstatic |
| negLogPostModel | NonDBayesCalibration | protected |
| nested_response_mappings(const RealMatrix &primary_coeffs, const RealMatrix &secondary_coeffs) | Iterator | virtual |
| nested_variable_mappings(const SizetArray &c_index1, const SizetArray &di_index1, const SizetArray &ds_index1, const SizetArray &dr_index1, const ShortArray &c_target2, const ShortArray &di_target2, const ShortArray &ds_target2, const ShortArray &dr_target2) | Iterator | virtual |
| no_spec_id() | Iterator | privatestatic |
| NonD(ProblemDescDB &problem_db, Model &model) | NonD | protected |
| NonD(unsigned short method_name, Model &model) | NonD | protected |
| NonD(unsigned short method_name, Model &model, const ShortShortPair &approx_view) | NonD | protected |
| NonD(unsigned short method_name, const RealVector &lower_bnds, const RealVector &upper_bnds) | NonD | protected |
| NonDBayesCalibration(ProblemDescDB &problem_db, Model &model) | NonDBayesCalibration | |
| nonDBayesInstance | NonDBayesCalibration | protectedstatic |
| NonDCalibration(ProblemDescDB &problem_db, Model &model) | NonDCalibration | |
| NonDDREAMBayesCalibration(ProblemDescDB &problem_db, Model &model) | NonDDREAMBayesCalibration | |
| nonDDREAMInstance | NonDDREAMBayesCalibration | privatestatic |
| nondInstance | NonD | protectedstatic |
| noSpecIdNum | Iterator | privatestatic |
| num_final_solutions() const | Iterator | inline |
| num_final_solutions(size_t num_final) | Iterator | inline |
| num_samples() const | Analyzer | inlinevirtual |
| numCandidates | NonDBayesCalibration | protected |
| numCAUV | NonD | protected |
| numChains | NonDDREAMBayesCalibration | protected |
| numContinuousVars | Analyzer | protected |
| numCR | NonDDREAMBayesCalibration | protected |
| numDiscreteIntVars | Analyzer | protected |
| numDiscreteRealVars | Analyzer | protected |
| numDiscreteStringVars | Analyzer | protected |
| numFinalSolutions | Iterator | protected |
| numFunctions | Analyzer | protected |
| numGenerations | NonDDREAMBayesCalibration | protected |
| numHyperparams | NonDBayesCalibration | protected |
| numLSqTerms | Analyzer | protected |
| numObjFns | Analyzer | protected |
| numPredConfigs | NonDBayesCalibration | protected |
| obsErrorMultiplierMode | NonDBayesCalibration | protected |
| one_sided_delta(Real current, Real target, Real relax_factor=1.) | NonD | inlineprotected |
| one_sided_delta(const SizetArray ¤t, const RealVector &targets, Real relax_factor=1., size_t power=1) | NonD | inlineprotected |
| one_sided_delta(const SizetArray ¤t, Real target, Real relax_factor=1., size_t power=1) | NonD | inlineprotected |
| one_sided_delta(const SizetArray ¤t, const RealVector &targets, SizetArray &delta_N, Real relax_factor=1.) | NonD | inlineprotected |
| one_sided_delta(const Sizet2DArray ¤t, const RealVector &targets, SizetArray &delta_N, Real relax_factor=1.) | NonD | inlineprotected |
| one_sided_relax_round(Real diff, Real relax_factor=1.) | NonD | inlineprotected |
| operator=(const Iterator &iterator) | Iterator | |
| output_level(short out_lev) | Iterator | inline |
| output_level() const | Iterator | inline |
| outputLevel | Iterator | protected |
| pack_parameters_buffer(MPIPackBuffer &send_buffer, int job_index) | Iterator | virtual |
| pack_results_buffer(MPIPackBuffer &send_buffer, int job_index) | Iterator | virtual |
| parallel_configuration_iterator(ParConfigLIter pc_iter) | Iterator | inline |
| parallel_configuration_iterator() const | Iterator | inline |
| parallel_configuration_iterator_map(std::map< size_t, ParConfigLIter > pci_map) | Iterator | inline |
| parallel_configuration_iterator_map() const | Iterator | inline |
| parallel_library() const | Iterator | inline |
| parallelLib | Iterator | protected |
| paramMaxs | NonDDREAMBayesCalibration | protected |
| paramMins | NonDDREAMBayesCalibration | protected |
| pdf_output() const | NonD | inline |
| pdf_output(bool output) | NonD | inline |
| pdfComputed | NonD | protected |
| pdfOutput | NonD | protected |
| post_input() | Iterator | virtual |
| post_run(std::ostream &s) | Analyzer | protectedvirtual |
| posteriorStatsKDE | NonDBayesCalibration | protected |
| posteriorStatsKL | NonDBayesCalibration | protected |
| posteriorStatsMutual | NonDBayesCalibration | protected |
| pre_output() | Analyzer | protectedvirtual |
| pre_run() | NonDBayesCalibration | protectedvirtual |
| predictionConfigList | NonDBayesCalibration | protected |
| predVals | NonDBayesCalibration | protected |
| prevCoeffs | NonDBayesCalibration | protected |
| prevNondInstance | NonD | protected |
| print_batch_means_intervals(std::ostream &s) (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
| print_chain_diagnostics(std::ostream &s) (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
| print_densities(std::ostream &s) const | NonD | inlineprotected |
| print_densities(std::ostream &s, String qoi_type, const StringArray &pdf_labels) const | NonD | protected |
| print_hi2lo_batch_status(int num_it, int batch_n, int batchEvals, const Variables &optimal_config, double max_MI) (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
| print_hi2lo_begin(int num_it) | NonDBayesCalibration | protected |
| print_hi2lo_chain_moments() (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
| print_hi2lo_file(std::ostream &out_file, int num_it, const VariablesArray &optimal_config_matrix, const RealVector &MI_vec, RealMatrix &resp_matrix) | NonDBayesCalibration | protected |
| print_hi2lo_selected(int num_it, const VariablesArray &optimal_config_matrix, const RealVector &MI_vec) (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
| print_hi2lo_status(int num_it, int i, const Variables &xi_i, double MI) (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
| print_intervals_file(std::ostream &stream, RealMatrix &functionvalsT, RealMatrix &predvalsT, int length, size_t aug_length) (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
| print_intervals_screen(std::ostream &stream, RealMatrix &functionvalsT, RealMatrix &predvalsT, int length) (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
| print_kl(std::ostream &stream) (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
| print_level_map(std::ostream &s, size_t fn_index, const String &qoi_label) const | NonD | private |
| print_level_mappings(std::ostream &s) const | NonD | inline |
| print_level_mappings(std::ostream &s, String qoi_type, const StringArray &qoi_labels) const | NonD | |
| print_level_mappings(std::ostream &s, const RealVector &level_maps, bool moment_offset, const String &prepend="") | NonD | |
| print_multilevel_discrepancy_summary(std::ostream &s, const SizetArray &N_m) | NonD | protected |
| print_multilevel_discrepancy_summary(std::ostream &s, const SizetArray &N_m, const SizetArray &N_mp1) | NonD | protected |
| print_multilevel_discrepancy_summary(std::ostream &s, const Sizet2DArray &N_m) | NonD | protected |
| print_multilevel_discrepancy_summary(std::ostream &s, const Sizet2DArray &N_m, const Sizet2DArray &N_mp1) | NonD | protected |
| print_multilevel_evaluation_summary(std::ostream &s, const SizetArray &N_m) | NonD | protected |
| print_multilevel_evaluation_summary(std::ostream &s, const Sizet2DArray &N_m) | NonD | protected |
| print_multilevel_model_summary(std::ostream &s, const std::vector< ArrayType > &N_samp, String type, short seq_type, bool discrep_flag) | NonD | protected |
| print_multilevel_row(std::ostream &s, const SizetArray &N_j) | NonD | private |
| print_multilevel_row(std::ostream &s, const SizetArray &N_j, const SizetArray &N_jp1) | NonD | private |
| print_results(std::ostream &s, short results_state=FINAL_RESULTS) | NonDBayesCalibration | protectedvirtual |
| print_system_mappings(std::ostream &s) const | NonD | protected |
| print_variables(std::ostream &s, const RealVector &c_vars) | NonDBayesCalibration | protected |
| prior_cholesky_factorization() | NonDBayesCalibration | protected |
| prior_density(int par_num, double zp[]) | NonDDREAMBayesCalibration | static |
| Dakota::NonDBayesCalibration::prior_density(const VectorType &vec) | NonDBayesCalibration | |
| prior_density(const RealVector &vec) (defined in NonDBayesCalibration) | NonDBayesCalibration | inline |
| prior_mean(VectorType &mean_vec) const | NonDBayesCalibration | |
| prior_sample(int par_num) | NonDDREAMBayesCalibration | static |
| Dakota::NonDBayesCalibration::prior_sample(Engine &rng, RealVector &prior_samples) | NonDBayesCalibration | |
| prior_sample_matrix(RealMatrix &prior_dist_samples) (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
| prior_variance(MatrixType &var_mat) const | NonDBayesCalibration | |
| priorCovCholFactor | NonDBayesCalibration | protected |
| probDescDB | Iterator | protected |
| problem_description_db() const | Iterator | inline |
| problem_size(int &chain_num, int &cr_num, int &gen_num, int &pair_num, int &par_num) | NonDDREAMBayesCalibration | static |
| problem_value(std::string *chain_filename, std::string *gr_filename, double &gr_threshold, int &jumpstep, double limits[], int par_num, int &printstep, std::string *restart_read_filename, std::string *restart_write_filename) | NonDDREAMBayesCalibration | static |
| proposalCovarData | NonDBayesCalibration | protected |
| proposalCovarFilename | NonDBayesCalibration | protected |
| proposalCovarInputType | NonDBayesCalibration | protected |
| proposalCovarType | NonDBayesCalibration | protected |
| pull_level_mappings(RealVector &level_maps, size_t offset) | NonD | protected |
| push_level_mappings(const RealVector &level_maps, size_t offset) | NonD | protected |
| query_cost(size_t num_steps, short seq_type, RealVector &cost) | NonD | inlineprotected |
| query_cost(size_t num_steps, short seq_type, RealVector &cost, BitArray &model_cost_spec, const SizetSizetPairArray &cost_md_indices) | NonD | protected |
| random_seed(int seed) | Iterator | virtual |
| randomSeed | NonDBayesCalibration | protected |
| read_variables_responses(int num_evals, size_t num_vars) | Analyzer | protected |
| readFieldCoords | NonDBayesCalibration | protected |
| recast_model_view(const ShortShortPair &view_override) | Analyzer | private |
| requested_levels(const RealVectorArray &req_resp_levels, const RealVectorArray &req_prob_levels, const RealVectorArray &req_rel_levels, const RealVectorArray &req_gen_rel_levels, short resp_lev_tgt, short resp_lev_tgt_reduce, bool cdf_flag, bool pdf_output) | NonD | |
| requestedGenRelLevels | NonD | protected |
| requestedProbLevels | NonD | protected |
| requestedRelLevels | NonD | protected |
| requestedRespLevels | NonD | protected |
| reset() | Iterator | virtual |
| residualModel | NonDBayesCalibration | protected |
| resize() | NonDCalibration | virtual |
| resize_communicators(ParLevLIter pl_iter, bool reinit_comms) | Iterator | |
| resize_final_statistics_gradients() | NonD | protected |
| respLevelTarget | NonD | protected |
| respLevelTargetReduce | NonD | protected |
| response_array_results() | Analyzer | inlineprotectedvirtual |
| response_error_estimates() const | Iterator | virtual |
| response_results() const | NonD | inlineprotectedvirtual |
| response_results_active_set(const ActiveSet &set) | NonD | inlineprotectedvirtual |
| resultsDB | Iterator | protected |
| resultsNames | Iterator | protected |
| returns_multiple_points() const | Analyzer | inlineprotectedvirtual |
| rnumGenerator | NonDDREAMBayesCalibration | protected |
| run(ParLevLIter pl_iter) | Iterator | |
| run() | Iterator | |
| run_hifi(const VariablesArray &optimal_config_matrix, RealMatrix &resp_matrix) | NonDBayesCalibration | protected |
| run_identifier() const | Iterator | protected |
| sample_likelihood(int par_num, double zp[]) | NonDDREAMBayesCalibration | static |
| sample_to_variables(const Real *sample_vars, Variables &vars) | Analyzer | protectedvirtual |
| samples_to_variables_array(const RealMatrix &sample_matrix, VariablesArray &vars_array) | Analyzer | protected |
| sampling_increment() | Iterator | virtual |
| sampling_reference(size_t samples_ref) | Iterator | virtual |
| sampling_reset(size_t min_samples, bool all_data_flag, bool stats_flag) | Iterator | virtual |
| sampling_scheme() const | Iterator | virtual |
| scalarDataFilename (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
| scale_model() | NonDBayesCalibration | protected |
| scaleFlag | NonDBayesCalibration | protected |
| set_communicators(ParLevLIter pl_iter) | Iterator | |
| specify_likelihood() (defined in NonDBayesCalibration) | NonDBayesCalibration | inlineprotectedvirtual |
| specify_posterior() (defined in NonDBayesCalibration) | NonDBayesCalibration | inlineprotectedvirtual |
| specify_prior() | NonDBayesCalibration | inlineprotectedvirtual |
| standardizedSpace | NonDBayesCalibration | protected |
| startCAUV | NonD | protected |
| stochExpIterator | NonDBayesCalibration | protected |
| sub_iterator_flag(bool si_flag) | Iterator | |
| sub_optimizer_select(unsigned short requested_sub_method, unsigned short default_sub_method=SUBMETHOD_NPSOL) | NonD | protected |
| subIteratorFlag | Iterator | protected |
| submethod_enum_to_string(unsigned short submethod_enum) const | Iterator | |
| subSamplingPeriod | NonDBayesCalibration | protected |
| summary_output(bool summary_output_flag) | Iterator | inline |
| summaryOutputFlag | Iterator | protected |
| surrExportFormat | Iterator | protected |
| surrExportPrefix | Iterator | protected |
| synchronize_batches(Model &model, bool log_best_flag=false) | Analyzer | protected |
| test_cost(short seq_type, const BitArray &model_cost_spec, SizetSizetPairArray &cost_md_indices) | NonD | protected |
| test_cost(bool cost_spec, SizetSizetPair &cost_md_indices, const String &model_id) | NonD | inlineprotected |
| top_level() | Iterator | |
| top_level(bool tflag) | Iterator | |
| topLevel | Iterator | protected |
| totalLevelRequests | NonD | protected |
| traits() const | Iterator | inline |
| unpack_parameters_buffer(MPIUnpackBuffer &recv_buffer, int job_index) | Iterator | virtual |
| unpack_parameters_initialize(MPIUnpackBuffer &recv_buffer, int job_index) | Iterator | virtual |
| unpack_results_buffer(MPIUnpackBuffer &recv_buffer, int job_index) | Iterator | virtual |
| update_aleatory_final_statistics() | NonD | protected |
| update_best(const Variables &vars, int eval_id, const Response &response) | Analyzer | private |
| update_best(const Real *sample_c_vars, int eval_id, const Response &response) | Analyzer | private |
| update_callback_data(const RealVector &cv_initial, const RealVector &cv_lower_bnds, const RealVector &cv_upper_bnds, const RealMatrix &lin_ineq_coeffs, const RealVector &lin_ineq_lb, const RealVector &lin_ineq_ub, const RealMatrix &lin_eq_coeffs, const RealVector &lin_eq_tgt, const RealVector &nln_ineq_lb, const RealVector &nln_ineq_ub, const RealVector &nln_eq_tgt) | Iterator | virtual |
| update_final_statistics() | NonD | protectedvirtual |
| update_from_model(const Model &model) | Analyzer | protectedvirtual |
| update_local_results(int job_index) | Iterator | virtual |
| update_model() | NonDBayesCalibration | protected |
| update_model_from_sample(Model &model, const Real *sample_vars) | Analyzer | protectedvirtual |
| update_model_from_variables(Model &model, const Variables &vars) | Analyzer | protectedvirtual |
| update_system_final_statistics() | NonD | protected |
| update_system_final_statistics_gradients() | NonD | protected |
| user_auto_id() | Iterator | privatestatic |
| uses_method() const | Iterator | virtual |
| valid_cost(Real cost) const | NonD | inlineprotected |
| valid_costs(const RealVector &costs) const | NonD | inlineprotected |
| variables_array_results() | Analyzer | inlineprotectedvirtual |
| variables_array_to_samples(const VariablesArray &vars_array, RealMatrix &sample_matrix) | Analyzer | protected |
| variables_results() const | Analyzer | inlineprotectedvirtual |
| variables_to_sample(const Variables &vars, Real *sample_c_vars) | Analyzer | protectedvirtual |
| vary_pattern(bool pattern_flag) | Analyzer | virtual |
| vbdDropTol | Analyzer | protected |
| vbdFlag | Analyzer | protected |
| weight_model() | NonDBayesCalibration | protected |
| weightFlag | NonDBayesCalibration | protected |
| writePrecision | Analyzer | private |
| zeros(const SizetArray &N_m) const | NonD | inlineprotected |
| zeros(const Sizet2DArray &N_m) const | NonD | inlineprotected |
| zeros(const SizetVector &N_m) const | NonD | inlineprotected |
| ~Analyzer() | Analyzer | inlineprotected |
| ~Iterator() | Iterator | virtual |
| ~NonD() | NonD | inlineprotected |
| ~NonDBayesCalibration() | NonDBayesCalibration | |
| ~NonDCalibration() | NonDCalibration | inline |
| ~NonDDREAMBayesCalibration() | NonDDREAMBayesCalibration |
1.8.20