Dakota
Version 6.19
Explore and Predict with Confidence
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This is the complete list of members for NonDDREAMBayesCalibration, including all inherited members.
acceptanceChain | NonDBayesCalibration | protected |
acceptedFnVals | NonDBayesCalibration | protected |
accepts_multiple_points() const | Iterator | virtual |
active_set(const ActiveSet &set) | Iterator | inline |
active_set() const | Iterator | inline |
active_set_request_values(short asv_val) | Iterator | inline |
active_set_request_vector(const ShortArray &asv) | Iterator | inline |
active_set_request_vector() const | Iterator | inline |
activeSet | Iterator | protected |
adaptExpDesign | NonDBayesCalibration | protected |
adaptPosteriorRefine | NonDBayesCalibration | protected |
add_lhs_hifi_data() | NonDBayesCalibration | protected |
algorithm_space_model() const | NonDBayesCalibration | inlineprotectedvirtual |
all_responses() const | Analyzer | inlinevirtual |
all_samples() | Analyzer | inlinevirtual |
all_variables() | Analyzer | inlinevirtual |
allHeaders | Analyzer | protected |
allResponses | Analyzer | protected |
allSamples | Analyzer | protected |
allVariables | Analyzer | protected |
Analyzer() | Analyzer | inlineprotected |
Analyzer(ProblemDescDB &problem_db, Model &model) | Analyzer | protected |
Analyzer(unsigned short method_name, Model &model) | Analyzer | protected |
Analyzer(unsigned short method_name, Model &model, const ShortShortPair &view_override) | Analyzer | protected |
Analyzer(unsigned short method_name) | Analyzer | protected |
ann_dist(const ANNpointArray matrix1, const ANNpointArray matrix2, RealVector &distances, int NX, int NY, int dim2, IntVector &k, double eps) (defined in NonDBayesCalibration) | NonDBayesCalibration | protectedstatic |
ann_dist(const ANNpointArray matrix1, const ANNpointArray matrix2, RealVector &distances, Int2DArray &indices, int NX, int NY, int dim2, IntVector &k, double eps) (defined in NonDBayesCalibration) | NonDBayesCalibration | protectedstatic |
apply_error_vec(const RealVector &error_vec, int &seed, int experiment) (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
apply_hifi_sim_error(int &random_seed, int num_exp, int exp_offset=0) | NonDBayesCalibration | protected |
archive_acceptance_chain() | NonDDREAMBayesCalibration | protected |
archive_allocate_mappings() | NonD | protected |
archive_allocate_pdf() | NonD | protected |
archive_equiv_hf_evals(const Real equiv_hf_evals) | NonD | protected |
archive_from_resp(size_t fn_index, size_t inc_id=0) | NonD | protected |
archive_model_response(const Response &, size_t idx) const | Analyzer | inlineprotectedvirtual |
archive_model_variables(const Model &, size_t idx) const | Analyzer | inlineprotectedvirtual |
archive_pdf(size_t fn_index, size_t inc_id=0) | NonD | protected |
archive_to_resp(size_t fn_index, size_t inc_id=0) | NonD | protected |
assess_emulator_convergence() | NonDBayesCalibration | protected |
assign_rep(std::shared_ptr< Iterator > iterator_rep) | Iterator | |
augment_gradient_with_log_prior(VectorType1 &log_grad, const VectorType2 &vec) | NonDBayesCalibration | protected |
augment_hessian_with_log_prior(MatrixType &log_hess, const VectorType &vec) | NonDBayesCalibration | protected |
batchEvals | NonDBayesCalibration | protected |
batchSize | NonDBayesCalibration | protected |
best_to_all() | NonDBayesCalibration | protected |
bestResponseArray | Iterator | protected |
bestSamples | NonDBayesCalibration | protected |
bestVariablesArray | Iterator | protected |
bestVarsRespMap | Analyzer | protected |
build_designs(VariablesArray &design_matrix) | NonDBayesCalibration | protected |
build_error_matrix(const RealVector &sim_error_vec, RealMatrix &sim_error_matrix, int &seed) | NonDBayesCalibration | protected |
build_field_discrepancy() (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
build_GP_field(const RealMatrix &t, RealMatrix &t_pred, const RealVector &concat_disc, RealVector &disc_pred, RealVector &disc_var) (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
build_hi2lo_xmatrix(RealMatrix &Xmatrix, int i, const RealMatrix &mi_chain, RealMatrix &sim_error_matrix) | NonDBayesCalibration | protected |
build_model_discrepancy() | NonDBayesCalibration | protected |
build_scalar_discrepancy() (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
burnInSamples | NonDBayesCalibration | protected |
cache_chain(const double *const z) | NonDDREAMBayesCalibration | protectedstatic |
calculate_evidence() | NonDBayesCalibration | protected |
calculate_kde() | NonDBayesCalibration | protected |
calibrate() | NonDDREAMBayesCalibration | protectedvirtual |
calibrate_to_hifi() | NonDBayesCalibration | protected |
calibrate_with_adaptive_emulator() | NonDBayesCalibration | protected |
calibrationData | NonDCalibration | protected |
callback_linear_ineq_coefficients() const | Iterator | virtual |
callback_linear_ineq_lower_bounds() const | Iterator | virtual |
callback_linear_ineq_upper_bounds() const | Iterator | virtual |
calModelDiscrepancy | NonDBayesCalibration | protected |
calModelEvidence | NonDBayesCalibration | protected |
calModelEvidLaplace | NonDBayesCalibration | protected |
calModelEvidMC | NonDBayesCalibration | protected |
cdfFlag | NonD | protected |
chainDiagnostics | NonDBayesCalibration | protected |
chainDiagnosticsCI | NonDBayesCalibration | protected |
chainSamples | NonDBayesCalibration | protected |
chainStats (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
check_sub_iterator_conflict() | Iterator | virtual |
choose_batch_from_mutual_info(int random_seed, int num_it, int max_hifi, int num_hifi, RealMatrix &mi_chain, VariablesArray &design_matrix, VariablesArray &optimal_config_matrix, RealVector &MI_vec) | NonDBayesCalibration | protected |
compact_mode() const | Analyzer | inlineprotectedvirtual |
compactMode | Analyzer | protected |
compute_best_metrics(const Response &response, std::pair< Real, Real > &metrics) | Analyzer | private |
compute_densities(const RealRealPairArray &min_max_fns, bool prob_refinement=false, bool all_levels_computed=false) | NonD | protected |
compute_intervals() (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
compute_prediction_vals(RealMatrix &filtered_fn_vals, RealMatrix &PredVals, int num_filtered, size_t num_exp, size_t num_concatenated) (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
compute_statistics() | NonDBayesCalibration | protectedvirtual |
computedGenRelLevels | NonD | protected |
computedPDFAbscissas | NonD | protected |
computedPDFOrdinates | NonD | protected |
computedProbLevels | NonD | protected |
computedRelLevels | NonD | protected |
computedRespLevels | NonD | protected |
configLowerBnds | NonDBayesCalibration | protected |
configUpperBnds | NonDBayesCalibration | protected |
configure_cost(unsigned short num_steps, bool multilevel, RealVector &cost) | NonD | inlineprotected |
configure_sequence(size_t &num_steps, size_t &secondary_index, short &seq_type) | NonD | protected |
construct_lhs(Iterator &u_space_sampler, Model &u_model, unsigned short sample_type, int num_samples, int seed, const String &rng, bool vary_pattern, short sampling_vars_mode=ACTIVE) | NonD | protected |
construct_map_model() | NonDBayesCalibration | protected |
construct_map_optimizer() | NonDBayesCalibration | protected |
construct_mcmc_model() | NonDBayesCalibration | protected |
convergence_tolerance(Real conv_tol) | Iterator | inline |
convergence_tolerance() const | Iterator | inline |
convergenceTol | Iterator | protected |
core_run() | NonDBayesCalibration | protectedvirtual |
correctedFieldResponses | NonDBayesCalibration | protected |
correctedFieldVariances | NonDBayesCalibration | protected |
correctedResponses | NonDBayesCalibration | protected |
correctedVariances | NonDBayesCalibration | protected |
crossoverChainPairs | NonDDREAMBayesCalibration | protected |
declare_sources() | Iterator | virtual |
derived_free_communicators(ParLevLIter pl_iter) | NonDBayesCalibration | protectedvirtual |
derived_init_communicators(ParLevLIter pl_iter) | NonDBayesCalibration | protectedvirtual |
derived_set_communicators(ParLevLIter pl_iter) | NonDBayesCalibration | protectedvirtual |
differ(size_t N_alloc_ij, const SizetArray &N_actual_ij) const | NonD | inlineprotected |
differ(const SizetArray &N_alloc_i, const Sizet2DArray &N_actual_i) const | NonD | inlineprotected |
differ(const Sizet2DArray &N_alloc, const Sizet3DArray &N_actual) const | NonD | inlineprotected |
discrepancy_sample_counts() const | NonD | inlineprotectedvirtual |
discrepancyFieldResponses | NonDBayesCalibration | protected |
discrepancyResponses | NonDBayesCalibration | protected |
discrepancyType | NonDBayesCalibration | protected |
discrepPolyOrder | NonDBayesCalibration | protected |
distribute_levels(RealVectorArray &levels, bool ascending=true) | NonD | private |
emulatorType | NonDBayesCalibration | protected |
epistemicStats | NonD | protected |
estimate_partition_bounds() | Iterator | virtual |
eval_hi2lo_stop(bool &stop_metric, double &prev_MI, const RealVector &MI_vec, int num_hifi, int max_hifi, int num_candidates) | NonDBayesCalibration | protected |
eval_tag_prefix(const String &eval_id_str) | Iterator | virtual |
evaluate_parameter_sets(Model &model, bool log_resp_flag, bool log_best_flag) | Analyzer | protected |
evaluationsDB | Iterator | protected |
evaluationsDBState | Iterator | protected |
evidenceSamples | NonDBayesCalibration | protected |
execNum | Iterator | private |
expData | NonDCalibration | protected |
export_chain() | NonDBayesCalibration | protected |
export_chain(RealMatrix &filtered_chain, RealMatrix &filtered_fn_vals) | NonDBayesCalibration | protected |
export_discrepancy(RealMatrix &pred_config_mat) | NonDBayesCalibration | protected |
export_field_discrepancy(RealMatrix &pred_vars_mat) | NonDBayesCalibration | protected |
export_final_surrogates(Model &data_fit_surr_model) | Iterator | protected |
export_posterior_samples_to_file(const std::string filename, const RealMatrix &posterior_data) const (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
exportCorrModelFile | NonDBayesCalibration | protected |
exportCorrModelFormat | NonDBayesCalibration | protected |
exportCorrVarFile | NonDBayesCalibration | protected |
exportCorrVarFormat | NonDBayesCalibration | protected |
exportDiscrepFile | NonDBayesCalibration | protected |
exportDiscrepFormat | NonDBayesCalibration | protected |
exportMCMCFilename | NonDBayesCalibration | protected |
exportMCMCFormat | NonDBayesCalibration | protected |
exportSurrogate | Iterator | protected |
extract_selected_posterior_samples(const std::vector< int > &points_to_keep, const RealMatrix &samples_for_posterior_eval, const RealVector &posterior_density, RealMatrix &posterior_data) const (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
filter_chain(const RealMatrix &acceptance_chain, RealMatrix &filtered_chain, int target_length) | NonDBayesCalibration | protected |
filter_chain(const RealMatrix &acceptance_chain, RealMatrix &filtered_chain) | NonDBayesCalibration | protected |
filter_chain_by_conditioning() | NonDBayesCalibration | inlineprotectedvirtual |
filter_fnvals(const RealMatrix &accepted_fn_vals, RealMatrix &filtered_fn_vals) (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
filter_matrix_cols(const RealMatrix &orig_matrix, int start_index, int stride, RealMatrix &filtered_matrix) | NonDBayesCalibration | protected |
filteredFnVals | NonDBayesCalibration | protected |
filteredMCMCFormat (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
final_moments_type() const | NonD | inline |
final_moments_type(short type) | NonD | inline |
finalize_run() | NonD | inlineprotectedvirtual |
finalMomentsType | NonD | protected |
finalStatistics | NonD | protected |
fnStats (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
free_communicators(ParLevLIter pl_iter) | Iterator | |
get_iterator(ProblemDescDB &problem_db) | Iterator | private |
get_iterator(ProblemDescDB &problem_db, Model &model) | Iterator | private |
get_iterator(const String &method_string, Model &model) | Iterator | private |
get_parameter_sets(Model &model) | Analyzer | protectedvirtual |
get_parameter_sets(Model &model, const size_t num_samples, RealMatrix &design_matrix) | Analyzer | protectedvirtual |
get_positive_definite_covariance_from_hessian(const RealSymMatrix &hessian, const RealMatrix &prior_chol_fact, RealSymMatrix &covariance, short output_lev) | NonDBayesCalibration | static |
get_positive_definite_covariance_from_hessian(const RealSymMatrix &hessian, RealSymMatrix &covariance) | NonDBayesCalibration | inlineprotected |
get_vbd_parameter_sets(Model &model, size_t num_samples) | Analyzer | protected |
gnewton_set_recast(const Variables &recast_vars, const ActiveSet &recast_set, ActiveSet &sub_model_set) | Iterator | protectedstatic |
grThreshold | NonDDREAMBayesCalibration | protected |
hifiModel | NonDBayesCalibration | protected |
hifiSampler | NonDBayesCalibration | protected |
homogeneous(const SizetArray &N_l) const | NonD | inlineprivate |
importCandFormat | NonDBayesCalibration | protected |
importCandPtsFile | NonDBayesCalibration | protected |
importPredConfigFormat | NonDBayesCalibration | protected |
importPredConfigs | NonDBayesCalibration | protected |
inflate_approx_samples(const ArrayType &N_l, bool multilev, size_t secondary_index, std::vector< ArrayType > &N_l_vec) | NonD | protected |
inflate_sequence_samples(const ArrayType &N_l, bool multilev, size_t secondary_index, std::vector< ArrayType > &N_l_vec) | NonD | protected |
init_bayesian_solver() (defined in NonDBayesCalibration) | NonDBayesCalibration | inlineprotectedvirtual |
init_communicators(ParLevLIter pl_iter) | Iterator | |
init_hyper_parameters() | NonDBayesCalibration | protected |
init_map_optimizer() | NonDBayesCalibration | protected |
initHifiSamples | NonDBayesCalibration | protected |
initial_point(const Variables &pt) | Iterator | virtual |
initial_point(const RealVector &pt) | Iterator | virtual |
initial_points(const VariablesArray &pts) | Iterator | virtual |
initial_points() const | Iterator | protectedvirtual |
initialize_counts() | NonD | private |
initialize_final_statistics() | NonD | protectedvirtual |
initialize_graphics(int iterator_server_id=1) | Iterator | virtual |
initialize_iterator(int job_index) | Iterator | virtual |
initialize_level_mappings() | NonD | protected |
initialize_model() | NonDBayesCalibration | protected |
initialize_model_graphics(Model &model, int iterator_server_id) | Iterator | protected |
initialize_response_covariance() | NonD | protectedvirtual |
initialize_run() | NonD | inlineprotectedvirtual |
invGammaAlphas | NonDBayesCalibration | protected |
invGammaBetas | NonDBayesCalibration | protected |
invGammaDists | NonDBayesCalibration | protected |
is_null() const | Iterator | inline |
iterated_model(const Model &model) | Iterator | inline |
iterated_model() | Iterator | inline |
iteratedModel | Iterator | protected |
Iterator(std::shared_ptr< TraitsBase > traits=std::shared_ptr< TraitsBase >(new TraitsBase())) | Iterator | |
Iterator(ProblemDescDB &problem_db, std::shared_ptr< TraitsBase > traits=std::shared_ptr< TraitsBase >(new TraitsBase())) | Iterator | |
Iterator(ProblemDescDB &problem_db, Model &model, std::shared_ptr< TraitsBase > traits=std::shared_ptr< TraitsBase >(new TraitsBase())) | Iterator | |
Iterator(const String &method_string, Model &model, std::shared_ptr< TraitsBase > traits=std::shared_ptr< TraitsBase >(new TraitsBase())) | Iterator | |
Iterator(const Iterator &iterator) | Iterator | |
Iterator(BaseConstructor, ProblemDescDB &problem_db, std::shared_ptr< TraitsBase > traits=std::shared_ptr< TraitsBase >(new TraitsBase())) | Iterator | protected |
Iterator(NoDBBaseConstructor, unsigned short method_name, Model &model, std::shared_ptr< TraitsBase > traits=std::shared_ptr< TraitsBase >(new TraitsBase())) | Iterator | protected |
Iterator(NoDBBaseConstructor, unsigned short method_name, std::shared_ptr< TraitsBase > traits=std::shared_ptr< TraitsBase >(new TraitsBase())) | Iterator | protected |
Iterator(NoDBBaseConstructor, Model &model, size_t max_iter, size_t max_eval, Real conv_tol, std::shared_ptr< TraitsBase > traits=std::shared_ptr< TraitsBase >(new TraitsBase())) | Iterator | protected |
iterator_rep() const | Iterator | inline |
iteratorRep | Iterator | private |
jumpStep | NonDDREAMBayesCalibration | protected |
kl_est (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
kl_post_prior(RealMatrix &acceptanceChain) | NonDBayesCalibration | protected |
knn_kl_div(RealMatrix &distX_samples, RealMatrix &distY_samples, size_t dim) (defined in NonDBayesCalibration) | NonDBayesCalibration | static |
knn_mutual_info(RealMatrix &Xmatrix, int dimX, int dimY, unsigned short alg) (defined in NonDBayesCalibration) | NonDBayesCalibration | static |
level_mappings_file(size_t fn_index, const String &qoi_label) const | NonD | private |
load_pilot_sample(const SizetArray &pilot_spec, size_t num_steps, SizetArray &delta_N_l) | NonD | protected |
load_pilot_sample(const SizetArray &pilot_spec, short seq_type, const Sizet3DArray &N_l, Sizet2DArray &delta_N_l) | NonD | protected |
log_likelihood(const RealVector &residuals, const RealVector &hyper_params) | NonDBayesCalibration | protected |
log_prior_density(const VectorType &vec) | NonDBayesCalibration | |
log_prior_density(const RealVector &vec) (defined in NonDBayesCalibration) | NonDBayesCalibration | inline |
map_pre_solve() | NonDBayesCalibration | protectedvirtual |
mapOptAlgOverride | NonDBayesCalibration | protected |
mapOptimizer | NonDBayesCalibration | protected |
mapSoln | NonDBayesCalibration | protected |
maxEvalConcurrency | Iterator | protected |
maxFunctionEvals | Iterator | protected |
maxHifiEvals | NonDBayesCalibration | protected |
maximum_evaluation_concurrency() const | Iterator | inline |
maximum_evaluation_concurrency(int max_conc) | Iterator | inline |
maximum_iterations() const | Iterator | inline |
maximum_iterations(size_t max_iter) | Iterator | inline |
maxIterations | Iterator | protected |
mcmcDerivOrder | NonDBayesCalibration | protected |
mcmcModel | NonDBayesCalibration | protected |
mcmcModelHasSurrogate | NonDBayesCalibration | protected |
method_enum_to_string(unsigned short method_enum) const | Iterator | |
method_id() const | Iterator | inline |
method_name(unsigned short m_name) | Iterator | inline |
method_name() const | Iterator | inline |
method_recourse(unsigned short method_name) | Iterator | virtual |
method_string(const String &m_str) | Iterator | inline |
method_string() const | Iterator | inline |
method_string_to_enum(const String &method_str) const | Iterator | |
methodId | Iterator | private |
methodName | Iterator | protected |
methodPCIter | Iterator | protected |
methodPCIterMap | Iterator | private |
methodTraits | Iterator | protected |
miPLIndex | NonD | protected |
momentStats | NonD | protected |
mutual_info_buildX() (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
mutualInfoAlg | NonDBayesCalibration | protected |
myModelLayers | Iterator | protected |
neg_log_post_resp_mapping(const Variables &model_vars, const Variables &nlpost_vars, const Response &model_resp, Response &nlpost_resp) | NonDBayesCalibration | protectedstatic |
negLogPostModel | NonDBayesCalibration | protected |
nested_response_mappings(const RealMatrix &primary_coeffs, const RealMatrix &secondary_coeffs) | Iterator | virtual |
nested_variable_mappings(const SizetArray &c_index1, const SizetArray &di_index1, const SizetArray &ds_index1, const SizetArray &dr_index1, const ShortArray &c_target2, const ShortArray &di_target2, const ShortArray &ds_target2, const ShortArray &dr_target2) | Iterator | virtual |
no_spec_id() | Iterator | privatestatic |
NonD(ProblemDescDB &problem_db, Model &model) | NonD | protected |
NonD(unsigned short method_name, Model &model) | NonD | protected |
NonD(unsigned short method_name, Model &model, const ShortShortPair &approx_view) | NonD | protected |
NonD(unsigned short method_name, const RealVector &lower_bnds, const RealVector &upper_bnds) | NonD | protected |
NonDBayesCalibration(ProblemDescDB &problem_db, Model &model) | NonDBayesCalibration | |
nonDBayesInstance | NonDBayesCalibration | protectedstatic |
NonDCalibration(ProblemDescDB &problem_db, Model &model) | NonDCalibration | |
NonDDREAMBayesCalibration(ProblemDescDB &problem_db, Model &model) | NonDDREAMBayesCalibration | |
nonDDREAMInstance | NonDDREAMBayesCalibration | privatestatic |
nondInstance | NonD | protectedstatic |
noSpecIdNum | Iterator | privatestatic |
num_final_solutions() const | Iterator | inline |
num_final_solutions(size_t num_final) | Iterator | inline |
num_samples() const | Analyzer | inlinevirtual |
numCandidates | NonDBayesCalibration | protected |
numCAUV | NonD | protected |
numChains | NonDDREAMBayesCalibration | protected |
numContinuousVars | Analyzer | protected |
numCR | NonDDREAMBayesCalibration | protected |
numDiscreteIntVars | Analyzer | protected |
numDiscreteRealVars | Analyzer | protected |
numDiscreteStringVars | Analyzer | protected |
numFinalSolutions | Iterator | protected |
numFunctions | Analyzer | protected |
numGenerations | NonDDREAMBayesCalibration | protected |
numHyperparams | NonDBayesCalibration | protected |
numLSqTerms | Analyzer | protected |
numObjFns | Analyzer | protected |
numPredConfigs | NonDBayesCalibration | protected |
obsErrorMultiplierMode | NonDBayesCalibration | protected |
one_sided_delta(Real current, Real target) | NonD | inlineprotected |
one_sided_delta(const SizetArray ¤t, const RealVector &targets, size_t power) | NonD | inlineprotected |
one_sided_delta(const SizetArray ¤t, Real target, size_t power) | NonD | inlineprotected |
operator=(const Iterator &iterator) | Iterator | |
output_level(short out_lev) | Iterator | inline |
output_level() const | Iterator | inline |
outputLevel | Iterator | protected |
pack_parameters_buffer(MPIPackBuffer &send_buffer, int job_index) | Iterator | virtual |
pack_results_buffer(MPIPackBuffer &send_buffer, int job_index) | Iterator | virtual |
parallel_configuration_iterator(ParConfigLIter pc_iter) | Iterator | inline |
parallel_configuration_iterator() const | Iterator | inline |
parallel_configuration_iterator_map(std::map< size_t, ParConfigLIter > pci_map) | Iterator | inline |
parallel_configuration_iterator_map() const | Iterator | inline |
parallel_library() const | Iterator | inline |
parallelLib | Iterator | protected |
paramMaxs | NonDDREAMBayesCalibration | protected |
paramMins | NonDDREAMBayesCalibration | protected |
pdf_output() const | NonD | inline |
pdf_output(bool output) | NonD | inline |
pdfComputed | NonD | protected |
pdfOutput | NonD | protected |
post_input() | Iterator | virtual |
post_run(std::ostream &s) | Analyzer | protectedvirtual |
posteriorStatsKDE | NonDBayesCalibration | protected |
posteriorStatsKL | NonDBayesCalibration | protected |
posteriorStatsMutual | NonDBayesCalibration | protected |
pre_output() | Analyzer | protectedvirtual |
pre_run() | NonDBayesCalibration | protectedvirtual |
predictionConfigList | NonDBayesCalibration | protected |
predVals | NonDBayesCalibration | protected |
prevCoeffs | NonDBayesCalibration | protected |
prevNondInstance | NonD | protected |
print_batch_means_intervals(std::ostream &s) (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
print_chain_diagnostics(std::ostream &s) (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
print_densities(std::ostream &s) const | NonD | inlineprotected |
print_densities(std::ostream &s, String qoi_type, const StringArray &pdf_labels) const | NonD | protected |
print_hi2lo_batch_status(int num_it, int batch_n, int batchEvals, const Variables &optimal_config, double max_MI) (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
print_hi2lo_begin(int num_it) | NonDBayesCalibration | protected |
print_hi2lo_chain_moments() (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
print_hi2lo_file(std::ostream &out_file, int num_it, const VariablesArray &optimal_config_matrix, const RealVector &MI_vec, RealMatrix &resp_matrix) | NonDBayesCalibration | protected |
print_hi2lo_selected(int num_it, const VariablesArray &optimal_config_matrix, const RealVector &MI_vec) (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
print_hi2lo_status(int num_it, int i, const Variables &xi_i, double MI) (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
print_intervals_file(std::ostream &stream, RealMatrix &functionvalsT, RealMatrix &predvalsT, int length, size_t aug_length) (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
print_intervals_screen(std::ostream &stream, RealMatrix &functionvalsT, RealMatrix &predvalsT, int length) (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
print_kl(std::ostream &stream) (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
print_level_map(std::ostream &s, size_t fn_index, const String &qoi_label) const | NonD | private |
print_level_mappings(std::ostream &s) const | NonD | inline |
print_level_mappings(std::ostream &s, String qoi_type, const StringArray &qoi_labels) const | NonD | |
print_level_mappings(std::ostream &s, const RealVector &level_maps, bool moment_offset, const String &prepend="") | NonD | |
print_multilevel_discrepancy_summary(std::ostream &s, const SizetArray &N_m) | NonD | protected |
print_multilevel_discrepancy_summary(std::ostream &s, const SizetArray &N_m, const SizetArray &N_mp1) | NonD | protected |
print_multilevel_discrepancy_summary(std::ostream &s, const Sizet2DArray &N_m) | NonD | protected |
print_multilevel_discrepancy_summary(std::ostream &s, const Sizet2DArray &N_m, const Sizet2DArray &N_mp1) | NonD | protected |
print_multilevel_evaluation_summary(std::ostream &s, const SizetArray &N_m) | NonD | protected |
print_multilevel_evaluation_summary(std::ostream &s, const Sizet2DArray &N_m) | NonD | protected |
print_multilevel_model_summary(std::ostream &s, const std::vector< ArrayType > &N_samp, String type, short seq_type, bool discrep_flag) | NonD | protected |
print_multilevel_row(std::ostream &s, const SizetArray &N_j) | NonD | private |
print_multilevel_row(std::ostream &s, const SizetArray &N_j, const SizetArray &N_jp1) | NonD | private |
print_results(std::ostream &s, short results_state=FINAL_RESULTS) | NonDBayesCalibration | protectedvirtual |
print_system_mappings(std::ostream &s) const | NonD | protected |
print_variables(std::ostream &s, const RealVector &c_vars) | NonDBayesCalibration | protected |
prior_cholesky_factorization() | NonDBayesCalibration | protected |
prior_density(int par_num, double zp[]) | NonDDREAMBayesCalibration | static |
Dakota::NonDBayesCalibration::prior_density(const VectorType &vec) | NonDBayesCalibration | |
prior_density(const RealVector &vec) (defined in NonDBayesCalibration) | NonDBayesCalibration | inline |
prior_mean(VectorType &mean_vec) const | NonDBayesCalibration | |
prior_sample(int par_num) | NonDDREAMBayesCalibration | static |
Dakota::NonDBayesCalibration::prior_sample(Engine &rng, RealVector &prior_samples) | NonDBayesCalibration | |
prior_sample_matrix(RealMatrix &prior_dist_samples) (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
prior_variance(MatrixType &var_mat) const | NonDBayesCalibration | |
priorCovCholFactor | NonDBayesCalibration | protected |
probDescDB | Iterator | protected |
problem_description_db() const | Iterator | inline |
problem_size(int &chain_num, int &cr_num, int &gen_num, int &pair_num, int &par_num) | NonDDREAMBayesCalibration | static |
problem_value(std::string *chain_filename, std::string *gr_filename, double &gr_threshold, int &jumpstep, double limits[], int par_num, int &printstep, std::string *restart_read_filename, std::string *restart_write_filename) | NonDDREAMBayesCalibration | static |
proposalCovarData | NonDBayesCalibration | protected |
proposalCovarFilename | NonDBayesCalibration | protected |
proposalCovarInputType | NonDBayesCalibration | protected |
proposalCovarType | NonDBayesCalibration | protected |
pull_level_mappings(RealVector &level_maps, size_t offset) | NonD | protected |
push_level_mappings(const RealVector &level_maps, size_t offset) | NonD | protected |
query_cost(unsigned short num_steps, bool multilevel, RealVector &cost) | NonD | protected |
query_cost(unsigned short num_steps, Model &model, RealVector &cost) | NonD | protected |
random_seed(int seed) | Iterator | virtual |
randomSeed | NonDBayesCalibration | protected |
read_variables_responses(int num_evals, size_t num_vars) | Analyzer | protected |
readFieldCoords | NonDBayesCalibration | protected |
recast_model_view(const ShortShortPair &view_override) | Analyzer | private |
requested_levels(const RealVectorArray &req_resp_levels, const RealVectorArray &req_prob_levels, const RealVectorArray &req_rel_levels, const RealVectorArray &req_gen_rel_levels, short resp_lev_tgt, short resp_lev_tgt_reduce, bool cdf_flag, bool pdf_output) | NonD | |
requestedGenRelLevels | NonD | protected |
requestedProbLevels | NonD | protected |
requestedRelLevels | NonD | protected |
requestedRespLevels | NonD | protected |
reset() | Iterator | virtual |
residualModel | NonDBayesCalibration | protected |
resize() | NonDCalibration | virtual |
resize_communicators(ParLevLIter pl_iter, bool reinit_comms) | Iterator | |
resize_final_statistics_gradients() | NonD | protected |
respLevelTarget | NonD | protected |
respLevelTargetReduce | NonD | protected |
response_array_results() | Analyzer | inlineprotectedvirtual |
response_error_estimates() const | Iterator | virtual |
response_results() const | NonD | inlineprotectedvirtual |
response_results_active_set(const ActiveSet &set) | NonD | inlineprotectedvirtual |
resultsDB | Iterator | protected |
resultsNames | Iterator | protected |
returns_multiple_points() const | Analyzer | inlineprotectedvirtual |
rnumGenerator | NonDDREAMBayesCalibration | protected |
run(ParLevLIter pl_iter) | Iterator | |
run() | Iterator | |
run_hifi(const VariablesArray &optimal_config_matrix, RealMatrix &resp_matrix) | NonDBayesCalibration | protected |
run_identifier() const | Iterator | protected |
sample_likelihood(int par_num, double zp[]) | NonDDREAMBayesCalibration | static |
sample_to_variables(const Real *sample_vars, Variables &vars) | Analyzer | protectedvirtual |
samples_to_variables_array(const RealMatrix &sample_matrix, VariablesArray &vars_array) | Analyzer | protected |
sampling_increment() | Iterator | virtual |
sampling_reference(size_t samples_ref) | Iterator | virtual |
sampling_reset(size_t min_samples, bool all_data_flag, bool stats_flag) | Iterator | virtual |
sampling_scheme() const | Iterator | virtual |
scalarDataFilename (defined in NonDBayesCalibration) | NonDBayesCalibration | protected |
scale_model() | NonDBayesCalibration | protected |
scaleFlag | NonDBayesCalibration | protected |
set_communicators(ParLevLIter pl_iter) | Iterator | |
specify_likelihood() (defined in NonDBayesCalibration) | NonDBayesCalibration | inlineprotectedvirtual |
specify_posterior() (defined in NonDBayesCalibration) | NonDBayesCalibration | inlineprotectedvirtual |
specify_prior() | NonDBayesCalibration | inlineprotectedvirtual |
standardizedSpace | NonDBayesCalibration | protected |
startCAUV | NonD | protected |
stochExpIterator | NonDBayesCalibration | protected |
sub_iterator_flag(bool si_flag) | Iterator | |
sub_optimizer_select(unsigned short requested_sub_method, unsigned short default_sub_method=SUBMETHOD_NPSOL) | NonD | protected |
subIteratorFlag | Iterator | protected |
submethod_enum_to_string(unsigned short submethod_enum) const | Iterator | |
subSamplingPeriod | NonDBayesCalibration | protected |
summary_output(bool summary_output_flag) | Iterator | inline |
summaryOutputFlag | Iterator | protected |
surrExportFormat | Iterator | protected |
surrExportPrefix | Iterator | protected |
top_level() | Iterator | |
top_level(bool tflag) | Iterator | |
topLevel | Iterator | protected |
totalLevelRequests | NonD | protected |
traits() const | Iterator | inline |
unpack_parameters_buffer(MPIUnpackBuffer &recv_buffer, int job_index) | Iterator | virtual |
unpack_parameters_initialize(MPIUnpackBuffer &recv_buffer, int job_index) | Iterator | virtual |
unpack_results_buffer(MPIUnpackBuffer &recv_buffer, int job_index) | Iterator | virtual |
update_aleatory_final_statistics() | NonD | protected |
update_best(const Variables &vars, int eval_id, const Response &response) | Analyzer | private |
update_best(const Real *sample_c_vars, int eval_id, const Response &response) | Analyzer | private |
update_callback_data(const RealVector &cv_initial, const RealVector &cv_lower_bnds, const RealVector &cv_upper_bnds, const RealMatrix &lin_ineq_coeffs, const RealVector &lin_ineq_lb, const RealVector &lin_ineq_ub, const RealMatrix &lin_eq_coeffs, const RealVector &lin_eq_tgt, const RealVector &nln_ineq_lb, const RealVector &nln_ineq_ub, const RealVector &nln_eq_tgt) | Iterator | virtual |
update_final_statistics() | NonD | protectedvirtual |
update_from_model(const Model &model) | Analyzer | protectedvirtual |
update_local_results(int job_index) | Iterator | virtual |
update_model() | NonDBayesCalibration | protected |
update_model_from_sample(Model &model, const Real *sample_vars) | Analyzer | protectedvirtual |
update_model_from_variables(Model &model, const Variables &vars) | Analyzer | protectedvirtual |
update_system_final_statistics() | NonD | protected |
update_system_final_statistics_gradients() | NonD | protected |
user_auto_id() | Iterator | privatestatic |
uses_method() const | Iterator | virtual |
valid_cost_values(const RealVector &cost) | NonD | protected |
variables_array_results() | Analyzer | inlineprotectedvirtual |
variables_array_to_samples(const VariablesArray &vars_array, RealMatrix &sample_matrix) | Analyzer | protected |
variables_results() const | Analyzer | inlineprotectedvirtual |
variables_to_sample(const Variables &vars, Real *sample_c_vars) | Analyzer | protectedvirtual |
vary_pattern(bool pattern_flag) | Analyzer | virtual |
vbdDropTol | Analyzer | protected |
vbdFlag | Analyzer | protected |
weight_model() | NonDBayesCalibration | protected |
weightFlag | NonDBayesCalibration | protected |
writePrecision | Analyzer | private |
zeros(const SizetArray &N_m) const | NonD | inlineprivate |
zeros(const Sizet2DArray &N_m) const | NonD | inlineprivate |
~Analyzer() | Analyzer | inlineprotected |
~Iterator() | Iterator | virtual |
~NonD() | NonD | inlineprotected |
~NonDBayesCalibration() | NonDBayesCalibration | |
~NonDCalibration() | NonDCalibration | inline |
~NonDDREAMBayesCalibration() | NonDDREAMBayesCalibration |